Array 1 12205-13559 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANSD01000007.1 Neisseria meningitidis NM3642 NM3642.contig.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12205 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 12271 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 12337 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 12403 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 12469 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 12535 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 12601 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 12667 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 12733 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 12799 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 12865 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 12931 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 12997 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 13063 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 13129 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 13194 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 13260 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 13326 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 13392 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 13458 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 13524 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //