Array 1 51253-52560 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYEA01000004.1 Salmonella enterica subsp. enterica serovar Bardo strain BCW_2643 NODE_4_length_225906_cov_4.14625, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51253 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 51314 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 51375 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 51436 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 51497 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 51558 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 51619 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 51680 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 51741 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 51802 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 51863 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 51924 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 51985 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 52046 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 52107 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 52168 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 52229 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 52290 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 52351 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 52412 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 52473 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 52533 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69230-70174 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYEA01000004.1 Salmonella enterica subsp. enterica serovar Bardo strain BCW_2643 NODE_4_length_225906_cov_4.14625, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69230 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 69291 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 69352 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 69413 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 69474 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 69535 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 69596 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 69657 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 69718 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 69779 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 69840 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 69901 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 69962 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 70023 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 70084 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 70145 29 100.0 0 ............................. | A [70172] ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //