Array 1 303367-304054 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058993.1 Pasteurella multocida strain 618/90 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 303367 28 100.0 32 ............................ ACATAAAACACCTGTGTTTTTATACAATATTT 303427 28 100.0 32 ............................ CTCGTTTTGTGGATTTGCTTGAGTTGGAACTT 303487 28 100.0 32 ............................ GAACAAAGCAGTAGAAATAAGTGAAGAGCGTT 303547 28 100.0 32 ............................ CAAACATTGTGATAAGCGAATTTAGAAACGCA 303607 28 100.0 32 ............................ TCGTGTCAATTGGAAGATTATCAAAAATACTT 303667 28 100.0 32 ............................ AATGGATAGCATTGCTTATTAGTGAAGATAAA 303727 28 100.0 32 ............................ TTGCACAAAGTCAACGCAACCGCATCACAGCG 303787 28 100.0 32 ............................ ATTTATCGAAACAAGATGACTTCTTTCACCGA 303847 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 303907 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 303967 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 304027 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.4 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1530420-1529372 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058993.1 Pasteurella multocida strain 618/90 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1530419 28 100.0 32 ............................ CGCCCTTGGCTTAGAAACGGTCGAAATTAATT 1530359 28 100.0 32 ............................ TCATGGGAAATGAAAAAGAGCCGTTTAACTGG 1530299 28 100.0 32 ............................ ATCAACGCGCACTTTTCCGCCGGGCAATACTG 1530239 28 100.0 32 ............................ GTGAAAATTTTCCGTGAGTTTTCGCGCATTAG 1530179 28 100.0 32 ............................ GCGCTTGTGTTTCTGTCGGGCGCAATAAGATC 1530119 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGTT 1530059 28 100.0 32 ............................ AGAACTTACTGAATTTGATATTAGAAAATCTT 1529999 28 100.0 32 ............................ ATTTTTCACAACGCATCTTTTCCATTGCGATG 1529939 28 100.0 33 ............................ GCACCACGACGGCACGCCACACTGGCACTTGTT 1529878 28 100.0 32 ............................ CACTGTTTTTCTTTTGAGTTTGCCACCCTCAA 1529818 28 100.0 32 ............................ TACTCCTTTGATAGTGTTTAAATGCCGTTTAA 1529758 28 100.0 32 ............................ TGCCGCATTTGTTGGAATAATTCCCATCAGCT 1529698 28 100.0 32 ............................ CCTAGCACGACGACATCACCACTTTTAACTGT 1529638 28 100.0 32 ............................ CGATTTTTTAATCCTTCGTCAATTTCCACTTC 1529578 28 100.0 32 ............................ ATCATAACTGCCTTTAATTAGATTAAAGCACC 1529518 28 100.0 32 ............................ ATCTTGTAGTCGATGTGCTGACTTGAACTCTG 1529458 28 100.0 32 ............................ TGAAATTTTGCGAAAACTGTTGGCAAAACTCG 1529398 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAGTGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTAGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //