Array 1 640433-639925 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066370.1 Shewanella putrefaciens strain ATCC 8071 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 640432 28 100.0 32 ............................ TCTGGATCAATATCAATATCTACTTCAGCAAA 640372 28 100.0 32 ............................ TAGAAGCGCATGCAGGCAATGGGTGAAGACAT 640312 28 100.0 32 ............................ AGAATCATAGCCTTCTACATTGTGCAGCGGAT 640252 28 100.0 32 ............................ TGCATCGTCATTAGCTGGCAATTCAGGCTTAG 640192 28 100.0 32 ............................ TGCCATATCGGCGGCGGCATCAATGTAATTTT 640132 28 100.0 32 ............................ ATTTTAGGAATAAATCATATATTTGTAGTTAA 640072 28 100.0 32 ............................ CAATTGAGATTACTTTGGCTGGTTGTCGAAAC 640012 28 100.0 32 ............................ AATCATCGACATTAATACCGATGAACTTTATG 639952 28 92.9 0 ..........................TG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TACGGGGTCTGCAGCGATAACCAATTTGTAGAACGCTATAACCAAGGGCATCAACAGTATCTCGTCAATAAGCGTTTGGCGGAAATCGCAGACCGTTTACACACTATTGATAGTGAGATCAGCAGTATTAATACCAAACTCAATAATCTCACCGATAAAGCCGACTTATTAAGGCAAAAAAATATCCTCTTAAATGAAAAAAATCATCTTCTAGATGAAAAAGCCCGCCTACGCCAAGGAAATATTGAGTTTAAATTTAGATTCTAACCATAAAAATCTAGCCATCCACAAAGCCAATTCAAAAGAGTAAACCCAAACAAAAATGTTAAAAGGAACAAGCCGTAAATAAGGCTATTTTAGGATGACTCACCCATACTTCTATTGCATTTAGAAATAAGCTATAAATACAAAAGGTTACAATAGATGATTTTTAAGAAGGTAAAAATACGTTTTTTATCCTAACTGCCTGTTGTAACTTTATTTTATTGATTTATTCTACA # Right flank : TCACCAACAATGCAAAACTGATCTACTTGTTTTCACTATCAAAGATGGGACATACCCAACTCTCTATGGATTAACAATCAAAACCGAGGTGACAGTATTTTACTCTTCCCTTCGAAATTGCCTCAGGGCATTTGCGTTCGTTGCGTGAGCGAGGCATGGTCATTCTCGTGCATATCTGGACCCATCCATTGCACTTCACAACATTCAGGCATCTTACCTATCAGATACCGAGATAGCGTCAGTCGAATCAGGGACGAGCAGTCCTTCTTGGTCGACTCTTGATTAAGAATAAGGAGGGAAAGCCCCACGACTTTTATTCACCTCGGCCGTAAGGCCGCAATGACTAACAATGTAGAAAGATGGGACACTCTAACCACCAGCAAAAGTATACGATGTTACACTTTTAGTAACTATTTCAGTGCTTAAATCTCAAAAAGTGTAGCTAAGTACACCTGAAACTTACCCAAGTCACCAGACCAAAAAACAAAACCCCAATTCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1986273-1989243 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066370.1 Shewanella putrefaciens strain ATCC 8071 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1986273 28 100.0 32 ............................ AGTCACGAAAGCTGCTACAGGCCACGCATAGC 1986333 28 100.0 32 ............................ TTCACGGATAGAGAAGGCTTCTCTTAACAATC 1986393 28 100.0 32 ............................ TCTGAGATTACTCTAATTTGCGGTACTGAAGT 1986453 28 100.0 32 ............................ ACATTGACGTCTAAGCCACTTGGTTTTAGCTT 1986513 28 100.0 32 ............................ CACCAGTGCAATAAGAGTTTCCTCAGCCGAAA 1986573 28 100.0 32 ............................ TTATATGGTTCGTTCTTTAACTACTGGTAAAA 1986633 28 100.0 32 ............................ ATGCAGCTAATCCCGCAATGCACCATGTGATC 1986693 28 100.0 32 ............................ TCAGACAGATAGGAAAAAATCAGTTCGTTGGT 1986753 28 100.0 32 ............................ TCTAAGTCATTGAATACCATTGCTTATCTTGT 1986813 28 100.0 32 ............................ AATCGCATTTTCAACATCACGCATACGCAAAA 1986873 28 100.0 32 ............................ TATCAAAGTCGGGCATCACAGCGAAAGTCGTC 1986933 28 100.0 32 ............................ ATTAGTAACATAGGTGTCACCAAGCCACGCCA 1986993 28 100.0 32 ............................ GAGGTACGATGCCGAAGGTTTTAACGAAAAAC 1987053 28 100.0 32 ............................ GTCAAGTAAAAATAAGACTGCACCAAACAAAT 1987113 28 100.0 32 ............................ CAGCCTTTAGGCCGCAGAACATGGACTAATCC 1987173 28 100.0 32 ............................ AACAACTCAGAACTAGGATTTTTAAAATCAGA 1987233 28 100.0 32 ............................ TTCACCCTCAATATCGCGGTCAAAGGCTTCTA 1987293 28 100.0 32 ............................ AGTACCCCTTCCATTATCAAATTCCCGCAAGC 1987353 28 100.0 32 ............................ TTTGCGCCAGAAAGCACGAGATTTATAGATAA 1987413 28 100.0 32 ............................ ATCGGGGCAATCATACCCCGACGGGGATGTTG 1987473 28 100.0 32 ............................ TTCGTGCGGAGCTGGGCTAGGTTTTGGGGCTC 1987533 28 100.0 32 ............................ TTTATTCCCGCCGTGAGCATTTCCCTGTAGCC 1987593 28 100.0 32 ............................ AACAGGAAGTATTCCTTGGTGAACGTAATCGC 1987653 28 100.0 32 ............................ GTTGGAGGACACACCTTTGATAAATCAACTGT 1987713 28 100.0 32 ............................ TTTTGGCAAGTCCCAATCATAGATTGGATCTT 1987773 28 100.0 32 ............................ TTAACCCCGGTTCGCAAGATTCAGCATACGTA 1987833 28 100.0 32 ............................ CGATTGGTTAACATCACCGGTTAGTGATTTTT 1987893 28 100.0 32 ............................ ATTTTGTACGTTTCGGTCGTGTCAGGGAAGTC 1987953 28 100.0 33 ............................ TTCCGTGCCGATAGCCGCTTCGAACGTTCCGAT 1988014 28 100.0 32 ............................ TATAAGCGCACCCATCTTTAGGGGTTTCAGGC 1988074 28 100.0 32 ............................ ATTGCAAAAAGAGATCAGCGACAACATAACGT 1988134 28 100.0 32 ............................ TGCCAGCCCTGAAACCACAATAGACTATGTTG 1988194 28 100.0 32 ............................ ACTGACTTCTGGCGTGGATATTAGTTTTTTAA 1988254 28 100.0 32 ............................ TGGTAGGAGTAAGGCTTTAATATTATTAGTAA 1988314 28 96.4 32 ..........G................. ATCGCCCGTGATAGCATCAACAGCGGCACTAA 1988374 28 96.4 32 ..........G................. TATAGCATTTTCTACATCACGCATTCTAAGAA 1988434 28 96.4 32 ..........G................. TTGCGATATTAATAACCGCATATAATCTGCTA 1988494 28 96.4 32 ..........G................. TTGGCGATTCTGGTAATGCTCGGTTAAGGCGA 1988554 28 96.4 32 ..........G................. GCATCGATAACGATGCTTGGCTCTGCTGGTGC 1988614 28 96.4 32 ..........G................. ATTAGAAGAATTATAATGATTAGTGAACTGTT 1988674 28 96.4 32 ..........G................. TGTTGAGGCTGGCGAGTCTGTTACAGCTAAAC 1988734 28 96.4 32 ..........G................. GCTCCGCTAAACATCAAGGGGATAAATCCCCT 1988794 28 96.4 32 ..........G................. CAGATGACAATTTCGCACGCTATTCAACTTAA 1988854 28 96.4 32 ..........G................. TCAATTACAACGCTTGGATTATCCATGTTTCG 1988914 28 96.4 32 ..........G................. TGAGTCGGTTTCATCATTAATTTCATCTAATT 1988974 28 96.4 32 ..........G................. GTCATCTGAAATCTGTGACTTCTTGACGTTTG 1989034 28 96.4 32 ..........G................. TTGGAGTTGGTGATGATTTTGAAGTGAACTCT 1989094 28 100.0 32 ............................ ATAGCTCAAAGCCAGCATGCCACTCTGCATTA 1989154 28 92.9 32 ..........G..............C.. TTCGTCATCAAACTTAAGCTGGATAGCCTGAG 1989214 28 85.7 0 ..........G...T.....T.....T. | TG [1989236] ========== ====== ====== ====== ============================ ================================= ================== 50 28 98.6 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : AATATGCTTACTTTAAACGCCGCCACTTTAAGTCACCTGACAAACTGCGCAGAAATATCGATGCTCGTGCGATAGTGATCGCCCAAAAAAATGGCTTTGATATTAATGAAGTTAAGACGCGTTTATTAGCGTCGATAGATAATCTCGATACTAAATCTAAATTGCCATTTATCAACTTGCGAAGTTTATCAACGGAGAAAGATGTCAGTCCCGCAGATCGCAGAAAGTTTTTATTGTTTATTGAGTGTGAAAAAGTCACCAAACCTAGTCAAAATAATGGGCTATTTAATTGCTACGGGCTTAGCCGTCGTGCTCAAACAGAACAAGCCGCAGTCCCTTGGTTTGAAGGTTAATTTAGAGACCTAAAATACCCTTTATTTTTGCTCTTTAAAAAATTAGTTTTAAAACAAAAAGTTACAACAGTTGATATTTAGAAAGGTAAAAGTACGTTTTTTTACCTATCTGCCTGTTGTAACTTATTTTTTTGCAGATAAGCTATT # Right flank : ATAGCGGTAAGGGTGAGTGCTAATATTGGCGTTAATGTCGTTGTTAACTTGTAGTCTTATCTTAAATCAGCATAATGCTTCGAACTCCCTTTTAACTTTAAGCCTAGTATTGTGATGTATGGCGTCAGCTAGAGAGTGCCAGCCCATATCGGCTATTGATGAGTTCAATAATTGATTACGGCCTTACGATACTTTTTGAATATTTTATAACACCTTGATAAAGGATAGATTTCCCCTTTGACTCGCTCCCGCCAATCAACCACTCAAGCCTCAGTGGTTAAGCCTTTAGCCTCAAACGGTTCTGTATCTGTAAGTCGACTCTCGACTGAAGTGCAACGTGCATTTTTGCAAGGAGGGGTATTGTCGACGCATATTCAAGGATTTAGTGCTCGGGAAAGTCAAATGCAGATGGCACAAGGGGTAAGTGAGGCCATTGCATCTAAAGGTAATTTGGTGATTGAGGCGGGCACGGGGGTTGGAAAAACCTTTGCCTATTTGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : GTTCACCGCCGCACAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //