Array 1 44210-42723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWNR01000014.1 Neisseria meningitidis strain Nm440529 scaffold14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44209 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 44143 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 44077 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 44011 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 43945 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 43879 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 43813 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 43747 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 43681 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 43615 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 43549 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 43483 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 43417 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 43351 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 43285 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 43219 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 43154 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 43088 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 43022 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 42956 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 42890 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 42824 36 100.0 30 .................................... TTCTTCAAATTCTTTCTGAGCAATTAATGC 42758 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //