Array 1 7893-5345 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJRJ01000005.1 Listeria monocytogenes strain BCW_4766 PROKKA_contig000005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7892 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 7826 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 7760 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 7694 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 7628 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 7562 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 7496 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 7430 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 7363 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 7297 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 7231 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 7165 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 7099 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 7033 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 6967 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 6901 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 6835 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 6769 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 6703 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 6637 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 6571 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 6505 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 6439 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 6373 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 6307 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 6241 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 6175 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 6109 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 6043 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 5977 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 5911 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5845 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5779 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5713 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5647 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5581 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5515 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5449 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5383 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5348,5351,5356] ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //