Array 1 51746-53973 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUKX01000015.1 Chromobacterium violaceum strain H5525 15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51746 29 100.0 32 ............................. ACAACAACGTCGCCTACGACAAACTGAAACGC 51807 29 100.0 32 ............................. AGCTGACTACCTTGGAGAATACCTCGTCCTCC 51868 29 100.0 32 ............................. CCGAAATCGCTGCCGCGCAAGGTGATGGATGC 51929 29 100.0 32 ............................. TCATCGACATCGACGACGGCCCCCGCCCGATT 51990 29 100.0 32 ............................. CCTGACAAAAACTCGAACGACGCTATCGAATC 52051 29 100.0 32 ............................. GTGTGCGTCCGCTGCGGCCGGCGTGGGCATTC 52112 29 100.0 32 ............................. GAAGCCGAACGCTTAAGCATGCGGGATTACTA 52173 29 100.0 32 ............................. TCCGAGGTCGAGGTGTTCGCCTGGGACATGGA 52234 29 100.0 32 ............................. GTGGATGTGCAGAACGGCAACATCGTCGCCGC 52295 29 100.0 32 ............................. GCAACCTGGCCAGGTTGAACGGGCTGCGCAAT 52356 29 100.0 32 ............................. GCACAGCGCGCCATCGGCTTTGTCTCCGCCAC 52417 29 100.0 32 ............................. TCTTTCTTGCCCAAATCGCGCGCCCAGGACTC 52478 29 100.0 32 ............................. CTGCACGAACTGGCTCGGCTGGCCGGCTGGGC 52539 29 100.0 32 ............................. TTCGAGCCTGGAGAATCGTTTAACAATAACGG 52600 29 100.0 32 ............................. GACGCGGCTGCGCGAGACCATGCCGGTCCTGG 52661 29 100.0 32 ............................. GCGGCGATCCAGACGGCGCGGACCCGAGGCGT 52722 29 100.0 32 ............................. TGATCCTGCAATCTGACCGGCAGGCCGCCGGG 52783 29 100.0 32 ............................. TATTCGACTGTCATTGCGTGAATTTGAGTGAA 52844 29 100.0 32 ............................. AGCTGGACGCCTCTGATTTTCATGCCGTATCC 52905 29 100.0 32 ............................. TCCAACGTATCAACGCACAAGAGGCCGAAAAA 52966 29 100.0 32 ............................. TTGGGCAGGGAAACTAATTTTTGAGGAGAAGT 53027 29 100.0 32 ............................. TGTAAAGCGGAATTAAGCGTTAGTGGCTACAA 53088 29 100.0 32 ............................. CCCCTGCGAGCCGCGCCAACGGCGATGACCAG 53149 29 100.0 33 ............................. GTAAGCATCCTGTTCCAGCTCCAGCGCCAGGCT 53211 29 96.6 32 .........A................... GCTTCGGCCTTGGTCGGCGGCGACGGCCCGGT 53272 29 96.6 32 .........A................... ATGGGGGGCCAACTCGGATAGCAGCCGGTTGG 53333 29 96.6 32 .........A................... CCGCGCGCGCCACGCTGCTGGCGTATGCCGAG 53394 29 96.6 33 .........A................... TACGGCGTCGAGTGTCCGCGGTGCAAGCAGTGC 53456 29 96.6 32 .........A................... ATGGTGGAGGCGGTCGCCCTGAATCCATGGGT 53517 29 96.6 32 .........A................... CCCTTCCGGGCCTTCCTCCTGCAGCACATCAT 53578 29 96.6 32 .........A................... AAATAAGGACACCCCCACATGCGCCCGACTTC 53639 29 96.6 33 .........A................... AACAGCGGCGGAGCCTGGCTGTCCCGAGCGCTG 53701 29 93.1 32 .........AT.................. GTCAACGTGATGCCGGTACTGCTGGGGCGCGG 53762 29 96.6 32 .........A................... GCTACGTGGACAGCCTGAAGGCGAAGGGCCGC 53823 29 96.6 32 .........A................... CTGGCCGAGATTTCCGGCGTGCCGGTGACGGC 53884 29 96.6 32 .........A................... CTCTGCGTCTCGATGTACTCGTAGTCGCCGTA 53945 29 89.7 0 .........A...............G..A | ========== ====== ====== ====== ============================= ================================= ================== 37 29 98.5 32 GTGTTCCCCGCGCACGTGGGGATGAACCG # Left flank : TGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCCAAGCTCAGCGGCTTGCCCGGGCCGATCAGATGCTGCTGGCCGATCACCTGGTCGAGCGCTTGCGGGCGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGGCATGGCGCGATTTTGGCGGGATGGGGTGGAGAAACAGTATACCAGTTGGGGACACGCATGAAAAAAGCGGCAGTCAGGCGCTTTTTGCTTGCATGTCGATGGAATGAAGGTACGCTATGGTTGCTGGCCTAGCGTAAGCCTTGCTGTTGCGGAAGCTTGGCGTTCAGCATCAGAGGCGAGCGGTGTCGGACCCTTGTGCAAGGGACGATTTGCCAAGGCCTGGCGGGGTTTGCCGTGCTGATTTGAACGCCGCTTCATGGCTGGGAAAATCGGTAGAATTTTAGATCGGATTTTTGTCTTTAAAAATCAGCAGCTTGAAAATGGT # Right flank : AAAGCCAGTGCCTCAAGGCTTGAGGGTTCGAGAATATTCCCCACGGTTGTGGGGGTGATTGACGGTGGACGGCTGGAGTGGTGTCGCGGCGCTGCCAGTCCGGCCGCGTCCGGCAACAAAAAAGCGCCCCGTGGGGCGCTTTTTTTCTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAATTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTCACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATAGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61308-63227 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUKX01000015.1 Chromobacterium violaceum strain H5525 15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61308 29 100.0 32 ............................. CATCATGGCCAGGTTGGCAACATCCTCGAAAT 61369 29 100.0 32 ............................. CTGCTCGTGACGCCGGCGCGGCTAGCCCTGGT 61430 29 100.0 32 ............................. GCGGCGACCTGGTGGACAACATGGGCAGCGGT 61491 29 100.0 32 ............................. CATGCCGGTATCGACGAGGCCGCCATGACCGA 61552 29 100.0 32 ............................. GACGAAAATGATTTCAAGGCAAGTCTGCCGCC 61613 29 100.0 32 ............................. CGATCGCGCTGGAATTGAGCGCGTGCGATAGC 61674 29 100.0 32 ............................. GACGGCAATCTGCTGATGTTCGTTTGCCGTTT 61735 29 100.0 32 ............................. TAAAAGAGCGCGTCAATACGCCGAAGCGAACA 61796 29 100.0 32 ............................. CAAATCACTCATAACTACGTCGCCACAGTAAC 61857 29 100.0 32 ............................. CGGCGTGATGATGCGAATTGGCGGCGCTTGTT 61918 29 100.0 32 ............................. TTGCAGCGAGTGACTGGCACTGTCCACCAGCG 61979 29 100.0 32 ............................. GTTCTGGAGACTGTGCGCGCCTGGTGATGCTA 62040 29 100.0 32 ............................. TCAGATTTCGGCATGCGATTGCGCGAGCAGAT 62101 29 100.0 32 ............................. GCATGGACGGCGTGGACGCCTTCGCCGCCATC 62162 29 100.0 32 ............................. AGGTACAGCATGATCAACATCGGCAACAGGAT 62223 29 100.0 32 ............................. CGCCATCCCTGACAACTACGCCCCGCTCTGTG 62284 29 100.0 32 ............................. CCGGCGACGATTGGGACAAGGTGCGCGCGGCG 62345 29 100.0 32 ............................. TCGGATCTGCAGGACACCCCATCCCCGGCAGC 62406 29 100.0 32 ............................. TACTAGCGTCTTGATTCGAATTTTTAGCAGCT 62467 29 100.0 32 ............................. CCCCGCCAGGATCAAACCGGCGGGGCTGATTC 62528 29 100.0 32 ............................. CCGCCGATCGCCAGCGCCGCTACGCCGATCGG 62589 29 100.0 32 ............................. CGCCTGGGCAAGTCCTTCAAACGCTGGGCGAA 62650 29 100.0 32 ............................. CCCCGCAAACGCGGGGCTTCGCATTCCAGGAG 62711 29 100.0 33 ............................. AATTGATCGGCAGTATCGCCAGTGATGGAGAAC 62773 29 100.0 32 ............................. TTCGAACGCCGCGCCACCGTCACCAAGCTGGG 62834 29 100.0 32 ............................. GTGGCAGCCTTGGGGTGACTTGCAGGCTATCT 62895 29 100.0 32 ............................. CTGGCACCTACCGCAGACGACCCGGACGAAGA 62956 29 100.0 32 ............................. GTCAAAGGGGAACCCCGCCCCCCACATTCAGC 63017 29 100.0 32 ............................. GCATCCAGGGCGAGTTCGGAGGGCCAGAGTTG 63078 29 100.0 32 ............................. CTGCTCCACATCCTGCAACACTCGCGCGGCCT 63139 28 96.6 32 ....................-........ CCAGGGGAAGGTGGCGAGACGCTGCCGGTCCA 63199 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.9 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCTTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGTTTCGCCGACGGCAGCCGGCTTACCGCCAACTTCGGCCCCGCGCCGGTCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGCCAGCCGCCCAGGCTGCTGCCAGTGGCGGATTGCGTCGACAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTTGCCGGTCATGGCGCGGCGGTTTGCCATGGCCGGCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTTGGGGTGGGTTTTTATCTTTAAAAATCAGCATCTTGAAATTGGT # Right flank : GTTCATCTACTGGCAGTGATACGGGATTTCAAAAATATGGGGATTGAAGCGTGGGCGATGGTTGTGGGAATCGTCAGGCCAAACGGCAGGTACAACTCTCGACCCTGCAAGTCGCTGCCTAGAGAAGTTTCATGGCATGAGTTATGTCAATATTCTTATTGACCAAAATGACAATGTGCTTTTGGGCTGATAGCCTGCGCGCTTGGGTTGGTTCCAGTTGGCAGATCGGTTTTCACTGGGAGAGGCGATGCAGACAGAGTTGGACGGCAAAAAAGAGGTTCATGAACCCTCCAGTGTAACCGGACTAAGTTTTGATGATCTGCACCCCGCGGTCCGACAGCTATGGGCCAAAAGCGGTGACCCGACTGGCCATGGCCTGTTATGTCACATGCTGGACGTGGCTGCGGTGACCAGAGCTTTGCTCGACTACTGCGGGATTTCGGCCAAGGCGTTGGCGCTGCGTTTCGGCCTGCCCGAGTGTGCGGTGTTTCCATGGTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 72003-74291 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUKX01000015.1 Chromobacterium violaceum strain H5525 15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 72003 29 100.0 32 ............................. TATCCGTCGGTTATCTGGTTGGCGGCATGAAG 72064 29 100.0 32 ............................. TTGCACGTTCTGGTTCGAAAACGATACATACA 72125 29 100.0 32 ............................. CTGGTTCAGAAGCTATTACCGGCGGCGCTGGT 72186 29 100.0 32 ............................. CTGTAGAAACTATAGCCGAAAGCACAAATGCC 72247 29 100.0 32 ............................. GCATGGTGGAAGCCAAGCCCGGATAAGCGCCG 72308 29 100.0 32 ............................. CCCTTACCAAGAGCGTGAGCTAGTGGCCTACA 72369 29 100.0 32 ............................. ATTGTTGGTGGTAAGATGAAAGCGGAAGGAGT 72430 29 100.0 32 ............................. TCGGCATTTATCTATAATTACTTGTGGACTTT 72491 29 100.0 32 ............................. GGCTAATCAATCATGGCAAATAGTTTTTCGAA 72552 29 100.0 32 ............................. AGCTTGGCAGATTGGAAAAAAAGAAGATAAGA 72613 29 100.0 32 ............................. GAAAAATAACTTTGTTTGTAGGCGAATTGTCC 72674 29 100.0 32 ............................. TTCGGCGATGCGATCGGTCTTGGCGTCGTAGT 72735 29 100.0 32 ............................. GCGTTCCGCAAAACGCCTATGAGCGCGCGCTG 72796 29 100.0 32 ............................. ATGGTACGGTGGTTGAATTTTGCGAGGTTGGC 72857 29 100.0 32 ............................. CTGTCTTTCATGTGATCATTTTAGAGAAGATA 72918 29 100.0 32 ............................. GCTTTATCGGTGATCCCGATTTCCTTTGCCAC 72979 29 100.0 32 ............................. GAGCTGGCCATCCCCTGGCGCAGCATGAGCCA 73040 29 100.0 32 ............................. TGCAGCTCACTGGCACGATTCGCGGGCTGGTC 73101 29 100.0 32 ............................. CTCTACCTTATCTTGTTCTTCGAGCATCATAA 73162 29 100.0 32 ............................. GCTACAAATACGAACTGCGGGAACTCTACACC 73223 29 100.0 32 ............................. CCACCAGCCCCGCGCGCCGTGTCCGTGAGCTC 73284 29 100.0 32 ............................. TTGAACGCGCCCTCAGCCTCGCCGCTGAACAA 73345 29 96.6 32 ............................A GGTCATCAGCATCGGAGCGCCTGACGTTACAG 73406 29 100.0 32 ............................. TGCGCGGCCGCCAGGCTGTCATCGATGATGTC 73467 29 100.0 32 ............................. CTGCGCGATGGCAAACCGCTGTTCCACCCGGA 73528 29 100.0 32 ............................. CAGCAGGGGCTGGACCGCATGATGATCGGCTT 73589 29 100.0 32 ............................. CGGTCCAGCAGCGGGAGGCGGGTTTGCCAAGT 73650 29 100.0 32 ............................. GCGTTGCGCGCGAGCTGCACATGATCCGCTAT 73711 29 100.0 32 ............................. CTGCCGAGGCTGACTTGGCGCTTGATGATGAC 73772 29 100.0 33 ............................. GAAGGGGGCGAAGCGTGAGCCAAAACAACGGAG 73834 29 100.0 33 ............................. GTCATGCCCCAGTCGATGATGAACTGGGCGGGA 73896 29 100.0 32 ............................. CTGTGGAGCAACTTCCATGAACGACAGACTCT 73957 29 100.0 32 ............................. CCGCCAACGAGGCCGGCCGCAAACTCGCTGAG 74018 29 100.0 32 ............................. ATTGAGCGCATCGGGCCGGCGCTGTGGGCGTT 74079 29 100.0 32 ............................. GGCCACCCGCTGTTTGTCTCCGGCGAACTGCG 74140 29 100.0 33 ............................. GATCGTCCGTCGAGTACACACGCACCGCAACAG 74202 29 100.0 32 ............................. AGCGAATCATGGTCATGCAATACCGGCAATAC 74263 29 79.3 0 ..........T.........A...TG.TC | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.4 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CGGACATCGAAACCATGCTGGACGCCGGCGGCCTGGACAAGCCGGAGGCGCAGGGCGTGGTGGACGCGGCGTTTCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGCTGCTGGAAATCCGCGCCGGCGTTTACGTGGGGAATTACAACCGCAAGATCCGCGATTACCTGTGGCAGCAGGTGGAAGAGGGGCTGGAAGACGGCAACGCGGTGATGGCTTGGCAGGCCGCCACCGAGGCCGGCTTCGACTTCGTCACCCTGGGCGCCAACCGCCGCATCCCGGCCGAGTTCGACGGCGCCAAATTGGTGTCTTTTTTGCCGCCGCCGGTGTCGGAAGCGGGGGGCGAATAGAGGGCGGGTGGGGTGTGGAGAAAGGTAGGTTTGGCTCTTTAAAAATCGGTAGATTTTTGAGTGGTGATTTTGTTTTGAAAAATCAGTTGCTTGCAGTTGGT # Right flank : CCTGCCCGTCTATCGCTTGCTTAATCCGCGGCCGTCGCGCTGCCCGATGCGCTTGCGATCGACGCGCCGCGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTCAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGCTGGCGCTGGCCGGCCATTCTCGCCGGCGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTGGCCGGCGCGGCGGCGTTCGCGGGGATAGAGGTGGTCAGCGGAGCCGTCGGCTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTTCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //