Array 1 494778-496331 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKNL01000008.1 Listeria monocytogenes strain NRRL B-33368 PROKKA_contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 494778 36 100.0 30 .................................... AACGTATTCAGCGAAGGGGAGCGCAGTTAC 494844 36 100.0 30 .................................... TTTTAATTTGAAGACTCAAAAATGGAGTTC 494910 36 100.0 30 .................................... TGGAGTGGCGCGAACTATAGCAATCGCATC 494976 36 100.0 30 .................................... TCTAGCAATACTCCCTGTAACGTCCGAATG 495042 36 100.0 30 .................................... GTATGAGAAATGAAAAAGGTACAGTGGTAG 495108 36 100.0 30 .................................... TCGCGTGACCCGTTTATAACTGCGTTACGT 495174 36 100.0 30 .................................... TTTTGTTCGCGTCGTTCTGTCAGCTCGAAT 495240 36 100.0 30 .................................... TGGATTTACTTTACTTGCGATGGGATTCAC 495306 36 100.0 30 .................................... TTATCAAGGATGCGGGGGGCGAATTGGCCG 495372 36 100.0 30 .................................... CCTAAAAAAAGGAAGTTTAGCAGGCGTGGA 495438 36 100.0 29 .................................... TTACCCCGGCTACATCGCGACCATCACGA 495503 36 100.0 30 .................................... CTTGATTGGACTTGATTTAAAGTCTGGTTT 495569 36 100.0 30 .................................... GAATAATCGTGCAAATGTTTATATCAGCGC 495635 36 100.0 30 .................................... TTATCGGGCAAAAAATGGCGTTTGCTTGCT 495701 36 100.0 30 .................................... CTACTGTCTTCGCCCCACTCCAATCATAGT 495767 36 100.0 30 .................................... GCAAGAAAAGCTATATGATGATGATATTGA 495833 36 100.0 30 .................................... GAAGCCTTTGTTTGGATTTTCAAAGATGGT 495899 36 100.0 30 .................................... AGGTGCAAGGAGGAAAGAAACCGTGCCAAG 495965 36 100.0 30 .................................... TATCTTCTAAGAATAAAGGCGAAGTTACGC 496031 36 100.0 30 .................................... TACTAGCTAGTGATTATGATGATGCGCTGA 496097 36 100.0 30 .................................... TAAAATTTATAAATCTGGATATACCGCTGA 496163 36 100.0 31 .................................... TCTAGTTCATCGTTACACGGCTATAGCATAG 496230 36 100.0 30 .................................... ATTAATTTCTTTCAGTTTTGAATTCATGCC 496296 36 75.0 0 .........................A.C.ATGTCTA | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 99.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAATTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGGAAAAATTCTGCGAG # Right flank : AAGAAAAAAATATTTTCATAAATCAGGTCTTAGTAGATTTTAAAAATGACTACAAAATTTTAAAAGGGAGATTCCACAATGAAAAAAACCTCAATCATTTTTATTTTTTGCGCACTCCTGCTAACCGCCTGCTCAACCACTACAAAAGAAACCCCTAGACAAACCACGGAAGCTACCGGCACAATTGAACAAGTAGAAACGGGATCAGTTTTAATCAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCATGACGAAACGGGAAACAAAATAAAACGAACCGAACTAAACAAAAATGACAACATAAAAATCATTTTAACAAAAGATTTCCCAATTCAAGAAACCTCGCCAGCCCAAATAGACCCAAAATACGTACAAAAAATCATCCTGCTAAACAAATAAAACTCTCTCGCCCACAGAGAGTTTTTTCTTTTCTCAAAAAAATAAACTCAAATTCCTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 299740-300029 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKNL01000011.1 Listeria monocytogenes strain NRRL B-33368 PROKKA_contig000011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 299740 29 100.0 35 ............................. TGATCTGGATAAGTTACATATAGTTCACATTTGAC 299804 29 100.0 37 ............................. ACAGTCGCATACTTAGCAATTCTTTTCATGCTGTCCT 299870 29 100.0 36 ............................. TGAAATGCTTTGATTGCAACCACATATCCATCCCGG 299935 29 96.6 37 A............................ GAAAAAGCACTTTTCAATACTCGTTCGTTTTCTTTTT 300001 29 79.3 0 ......A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 95.2 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCAGGAAACGCAACCGAACGCTTACAAAATTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAAGGATAAGCAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTTGGGAAATCTTCAGGATAAGGCGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACTAGT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //