Array 1 163690-161847 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQDM01000006.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SA_078 NODE_6_length_267430_cov_43.6022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163689 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 163628 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163567 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 163506 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 163445 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 163384 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 163323 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163261 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 163200 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 163139 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 163078 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163017 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162956 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162895 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162834 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162773 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162712 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162651 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162590 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162528 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162425 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162364 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162303 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162242 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 162181 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 162120 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162059 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161998 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161937 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161876 29 96.6 0 A............................ | A [161849] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180763-179820 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQDM01000006.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SA_078 NODE_6_length_267430_cov_43.6022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180762 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180701 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180640 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180579 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180518 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180457 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180396 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180335 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180274 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180213 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180152 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180091 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180030 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179969 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179908 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179847 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //