Array 1 537-104 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACHXA010000013.1 Limibacillus halophilus strain CECT 8803 Ga0372437_13, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
       536	    36	  97.2	    30	.....A..............................	ACCAGTCTATTTGACTGCGCTAACCGGAGC 	
       470	    36	 100.0	    30	....................................	GAACGGGTCCGTCAAGAACTTCACCCGCAA 	
       404	    36	 100.0	    30	....................................	CTCCGCGACCCCGACCTATCCGACGAAGAC 	
       338	    36	 100.0	    31	....................................	GTGCTCTGCGCGCAGGAGACCGGCGGCGAGC	
       271	    36	 100.0	    29	....................................	GTGCTGTTGTGGTTCCCTCAATTTCGCGA  	
       206	    36	 100.0	    31	....................................	GACCACCCACTTCTCCAACCTGCTGCCCTTG	
       139	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
         7	    36	  99.6	    30	GTTGCGGCTGGACCACGAATTCTGAACTGCTAATCT	                               	       

# Left flank :   AGAGCAGATTAGCACGGCGTTCAGGGATCTGTGCCGCATCGGCGCTGCGGTATCGGATTTGGATTATCGGAAGGCGCAGCTGTGCCGCAGCAAATGTTATTGCGCATTGCGAGAGACGCTGGCGCCAGGGGAGTTAATCCTTACGCCCGCAGCGCCCGGCACCGCGCCGCAACGACACACCGGAACGGGCGATCCAATCTTTAATCGGCTCTGGACCCTGTTAGGAGTTCCCTGTGTCTCAGTCCCTGTCCATCGATCTAGTCGGCTGCCGCTCGCAGTGCAGGTGATTGGGGGTCGCGGCGAAGATCAGGCCGTGCTGAGGGCGGCGGAATGGCTGTCCCAGGCGTTGCCCAGTGTGTTGATATGTTAACTCTCAAAGAGGAGGTGTCATGTGTGGACGTATATGGACCCCGCCCGATTGCAACGGGATGGCTGGATCAGGTTTAAGGGCCACAACGGAGAGCTGACAGCTCCTACGTTGACATATAATTGGCCGATCG
# Right flank :  TCTTCGCATGGAGCTGTCATGTGTGGACGGCCCCGTTTGCGCAAGGGTTGATTTGAGCTTCTGACGATCGTTGCGGGGTGCGGTCATGTGTCCGGCCTTTTGGC

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGCGGCTGGACCACGAATTCTGAACTGCTAATCT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [10,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTTGCGGCTGGACCTCGAATTCTGAACAGCTAAACT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.70,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.78,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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