Array 1 34288-33181 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRK01000008.1 Escherichia sp. MOD1-EC5434 MOD1-EC5434_8_length_234950_cov_59.1879, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34287 28 100.0 32 ............................ GTTATGGTGCCGGTGGTTTGCTGCATATAAGC 34227 28 100.0 32 ............................ GTACCCTGGTGAGAAAGACGAGCGCCCGTCTT 34167 28 100.0 32 ............................ TGTTCATCCGGGAAGCCCCGCGTCTGATACCA 34107 28 100.0 32 ............................ GGACTTCATCGCAAAACACGCGGTAACGCAGC 34047 28 100.0 32 ............................ CGTCTTTATCACCCGATCTCCGGTATCGAAAT 33987 28 100.0 32 ............................ AGGAGGAGGAGCGTAATCGCCTGACGCTGGAA 33927 28 100.0 32 ............................ GCGCCTCCGCGACGCAATTAACATGGCAAAAT 33867 28 100.0 32 ............................ GCTCACAATCCCGCGCTCATACCCCCACTTGT 33807 28 100.0 32 ............................ GGCATGTAAACATCAGAGAGTTGTCTTAATTT 33747 28 100.0 32 ............................ GTTCGGAGTCGGCCTGTTCTGGCTTAAACTGT 33687 28 100.0 32 ............................ CACACCAAAACTGCTAACCATAGCAGCCCATT 33627 28 100.0 32 ............................ GGTACAGCTCCAGCATTAATCCCCACCAGCTC 33567 28 100.0 32 ............................ AGTTTGCTCTGAGCATATTCAAAGCGGTAATT 33507 28 100.0 32 ............................ TGAGCATCGGAGCAAAAGGACGAGTTATGGAT 33447 28 100.0 32 ............................ AAAGTGTCCCTTTATAGCCTTTAGCCCGTGCC 33387 28 100.0 32 ............................ ATCCACCGGGCCTGATGACACGCTTTGCACGC 33327 28 100.0 32 ............................ CGTGCATCATGAATCATGCTGTTCAGCACGCG 33267 28 100.0 32 ............................ GCCGAAGCCCGGCGTAGCCGGTACGGATCATC 33207 27 85.7 0 .......A...C........-...T... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCTGGGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCATGCGGTTCATCCGTCCAGGATTGTGAATGTATATGCTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCTAATCGACCCTTTTTTCAGGGTGAGATGTAACGCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGAGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTTTGTTATTATTCCA # Right flank : ATCCATAACCCAATATTTATTTTCTTCCTTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 45228-43156 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRK01000008.1 Escherichia sp. MOD1-EC5434 MOD1-EC5434_8_length_234950_cov_59.1879, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45227 28 100.0 32 ............................ ATTTGTCTGCGCGGGTCATGCGGGGTTTACCC 45167 28 100.0 32 ............................ GCAAATCTGGCAATCGAGGCCGCGTTTATTCG 45107 28 100.0 32 ............................ TTCAGTAACAGTAATATGCGATTCTTTATGCG 45047 28 100.0 32 ............................ TCGAGGCGACAGAAACATTCTACACGTTAGAA 44987 28 100.0 32 ............................ GATTGCATCGCGGCGTATACGGCTTTCTCAAT 44927 28 100.0 33 ............................ GCTTTGTCAGAAGCGGGTGTGTTATTTCCAAAG 44866 28 100.0 32 ............................ ATTGAGCGTGCAACCGAGCGCCAGATTAACGT 44806 28 100.0 32 ............................ AGAACGGGAAGGCGTGCAACTTAGGAGAGTTC 44746 28 100.0 32 ............................ TTGTCTGACGGTCACTGTTCGGCACGGTGTTG 44686 28 100.0 32 ............................ GTAACAATCAACGTGGAGTATAAATAATGTTA 44626 28 100.0 32 ............................ TTGAGGCTACAGAAACGTTCTACACGTTAGAA 44566 28 96.4 32 .......................T.... GCAACGTGGACAAATACGGCAATCCTCATATA 44506 28 100.0 32 ............................ ATAAGGCCCGAACCGTCGAACAAAGACCATAT 44446 28 100.0 32 ............................ GGAATGGTCGAACGTAACGGAGGCAGATTTAG 44386 28 100.0 32 ............................ GCTAAAGTTGCCGAGTGTTTGGGCAATGTTTA 44326 28 100.0 32 ............................ TATGGCTGATAAGCTATGGAACCCCGACTATT 44266 28 100.0 32 ............................ AGGTGGAAGCAGATAACCGCGTATCGTGAATA 44206 28 100.0 32 ............................ ACGCCGAAGTGTTGGGCATCAAGGATTCTCCA 44146 28 100.0 33 ............................ AGCGGCATCGACTGCGCAACGGGGTTCCTGTCC 44085 28 100.0 32 ............................ GCTAAGGTAGAAGAGAAAGAACCTGAAGTTGA 44025 28 100.0 32 ............................ GTTTTGATGTATCGAAACTTACCGCTTCTACT 43965 28 100.0 32 ............................ CAACATCAGCTCCCCGGCGTCGAGCATCTTTT 43905 28 100.0 32 ............................ GCTGAGCAAAACGCATTAACACAAGACTGGTC 43845 28 100.0 32 ............................ AAATCTGATGGGCGGCAGAAGTAGTTTTACCT 43785 28 100.0 32 ............................ GTACAGCCGGTCGCAGTATCACGACGGGCAGG 43725 28 100.0 32 ............................ TCCCAGTTCTGCAGATATGCATCCGATACCGC 43665 28 100.0 33 ............................ GGAGAACGGCGGGAACGCGGTAGCACCAATGAT 43604 28 100.0 32 ............................ CAGCACGGTGCGTCCATCAAATTGACCGGTGG 43544 28 100.0 32 ............................ TCTTATTGCCTCTTATCGCCTGGACTGGTTCC 43484 28 100.0 32 ............................ TGGAAAGGGGCGAGCTTACTGTCAACGACGAT 43424 28 100.0 32 ............................ TGCGCACGTTCATCACATGCGGTGCAAATAAT 43364 28 100.0 32 ............................ AGACACTCTCTGGTGGTGAGAAGCGGAAGGTT 43304 28 100.0 32 ............................ AGACACTCTCTGGTGGTGAGAAGCGGAAGGTT 43244 28 100.0 32 ............................ AGACACTCTCTGGTGGAGAGAAGCGGAAGATT 43184 28 89.3 0 ....................T...C..T | C [43160] ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAGCTGGATCAAAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCACGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGACGGCGGCCAGGTCACCGTTGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTGTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTTCTGTAACTTATTGATAATTAACGCTGCTGGAAGGCAAGGATAAAAAAGGGTGGCAGCAGGGAAATTGGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGTAATGGTAGACGTTTGGTCATATCATGATGCTCTCAACGTCAAAACATTAGCCTTAGCACACAATAACAAATGTAATAATTGCGACAGAAATCAATTTCCTGCACAGAAATCAATGTTGTACTAATCCTAACGCCTTAAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACTATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTACGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGCCCACAAAGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //