Array 1 38217-38671 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQE010000011.1 Nocardia cyriacigeorgica strain BJ06-0133 NODE_11_length_88348_cov_36.633806, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38217 29 100.0 32 ............................. ATGCGTGGGGCGTGGTAGGAAGCATCGCGGGT 38278 29 96.6 32 ..C.......................... AACATCGACCCCGTCGAGCTGCCGTACACCCC 38339 29 96.6 32 ..........T.................. CAGGCGTAGACGCGCCTACAGCCCTTCCAGGG 38400 29 89.7 32 ......................GC.C... GAGTGGCAGGGAATCACCTCGGCTGGTATCTC 38461 29 93.1 32 ............T...............T TCGGCCATCACAGCCGCGCTGACGATTAAGGA 38522 29 79.3 32 ...G...TT...T.....A.........C GACGGGCGCGGTCAGCCGTGGCCTGCCGTCCA 38583 28 86.2 32 ........T...-G..............T CAGCAGACAGGTCGGGTACGTCTGCGGACTGT 38643 29 93.1 0 ..............T.........G.... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 91.8 32 GTGCTCCCCGCGCAGGCGGGGATGATCCG # Left flank : TGGCCGCCAGCGCCCCCGACGCCGACCTGGTCGCCGCCGTCGACGCCCGCGGCTTCCTGCTCGGCGCCGGCGTCGCCGCCACCCTCGGAACCGGCGTCATCGCCGTCCGCAAGGCAGGCAAGCTGCCGCCCCCGGTCGTCACCCGCGAATACGACCTTGAGTACGGCAAAGCGGCCCTGGAAATCCCCGCCGACGGCGTCTCCCTGACGGGCCGTCGCGTCCTGCTCCTCGACGACGTCCTCGCCACCGGCGGCACCCTCGCCGCGGCGGCCGACCTGTTCACCCAGGCCGGCGCCGAGATCGTCGCGGCGGCGGTGGTGCTGGAGCTGGAATCGCTCGGCGGTCGCAAGCGGCAGGGGAGCTATCCGCTGTCGGCCATCGTCACCATGTGAGCCGGATTGCCACTTCTCAGCGCCTGTGCGGAGAAGTGGATCCGATGTTCTCACCGCATCAAGTGGTTCAAATCGCGGTTACTGACCGGTAGAGTGCCTGGTCAGGAA # Right flank : GTTCAGGTACTCGTTAGGCGCGAGCTCTAGCTGCAGTCTGGGCGGGTGTGACGAAGTGCGGTGGATACGTCGGCCATGAATCCAGGCATAGCGGTGACCCGGTTCGGCTCGCGCCAAGATCGGAGGGGGGCCTGAGGGCTTGCGGCAGGGCTGGTTGCAGATAGTCGAAAGCAGATCGGCGACTGCCGGACCCCGGCTCTGGCGCAGCCTGAATCATTCGTTCGTTCTTCGGGAGCGAAGGGTGGGTGCCTGTTGGTTGGGTCGGCCAAACGTGGGCAGCTCGATCGTCCGAAGTGGTCAAATTCTCGGTTACTCGCCGGTAGAGTGCCTGGTCAGGGTGTGCTCCCCGCGTAGGCGGGGATGATCCGGACCTCTACATCGAGATCGGCTGCCAGTGGGCGTGCTCCCCGCGTAGGCGGGGATGATCCCCGCGAGAAGACCTCGGAGGATCACGGCGACATGTGCTCCCCGCGTAGGCGGGGATGATCCGGCCCGCGAGG # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 39010-39716 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQE010000011.1 Nocardia cyriacigeorgica strain BJ06-0133 NODE_11_length_88348_cov_36.633806, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 39010 29 96.6 32 ............................G GACCTCTACATCGAGATCGGCTGCCAGTGGGC 39071 29 100.0 32 ............................. CGCGAGAAGACCTCGGAGGATCACGGCGACAT 39132 29 96.6 32 ............................G GCCCGCGAGGAACGCATCAAGCACGAGCGGCA 39193 29 93.1 32 ............C...............G GGCCACAGCGCGGACGCGGTCGAGCGGGATGC 39254 29 100.0 32 ............................. GAGAAGGAGATCGCCCACGCCACCGCGCTCAT 39315 29 100.0 32 ............................. TGGGAGTCGCGTGGCTGGCCGGGCGTGCTGCT 39376 29 93.1 32 ............C...............G GGCACCGGCGACGCGATCCCGACCGCGATCCG 39437 29 100.0 32 ............................. GCATCAGCGCATCGACAAGCCCAGCAAGCCTC 39498 29 93.1 40 ....................C.......G TTGTCGACCATCCACCGAGCGGCCGGGTTGCCACCGTGCC 39567 29 96.6 32 .............T............... AGCGCCTGACGCGGGATGCACGAGGCGAAGGC 39628 28 82.8 32 ...-.T......C.T.............T CCGCGCTGGTGATGGCCGTGCAGGCCGCGACA 39688 29 86.2 0 ............C.T.........G...G | ========== ====== ====== ====== ============================= ======================================== ================== 12 29 94.8 33 GTGCTCCCCGCGTAGGCGGGGATGATCCC # Left flank : GACGATTAAGGAGTGGTCCTTGCGTAGGCGAGGATGATCCCGACGGGCGCGGTCAGCCGTGGCCTGCCGTCCAGTGCTCCCTGCGGGGCGGGGATGATCCTCAGCAGACAGGTCGGGTACGTCTGCGGACTGTGTGCTCCCCGCGCATGCGGGGATGGTCCGTTCAGGTACTCGTTAGGCGCGAGCTCTAGCTGCAGTCTGGGCGGGTGTGACGAAGTGCGGTGGATACGTCGGCCATGAATCCAGGCATAGCGGTGACCCGGTTCGGCTCGCGCCAAGATCGGAGGGGGGCCTGAGGGCTTGCGGCAGGGCTGGTTGCAGATAGTCGAAAGCAGATCGGCGACTGCCGGACCCCGGCTCTGGCGCAGCCTGAATCATTCGTTCGTTCTTCGGGAGCGAAGGGTGGGTGCCTGTTGGTTGGGTCGGCCAAACGTGGGCAGCTCGATCGTCCGAAGTGGTCAAATTCTCGGTTACTCGCCGGTAGAGTGCCTGGTCAGGGT # Right flank : GTTCAGTGCGTGAATTCGCCGAGACTGTCGATGTATTCGCGGTACTCGGTGTCGGCGTACCCGATCAGCCGGGAGATCGTTTCTTGCATTGCCACGGTTGTTGCGGGCTGGACTGTTCGGGTTCGGATGCCGGTTTCGAGGTAGCGGCCGTCGGCTTTTATGTCGAACCAGCGGATGGTGCCGACTTTGCGGTGGGGTGTGGGGCCGTTGTGGCGGGGTCCGCGGAAGACTGTGATCAGGCCGGCTCCGGTGGCGGGGCGGCGAAGTAGCTGGGTGTAGCGTTCGAGGGGCGTGGGTTCGCCGGTGTAGCGGACGACGGGTTGATTGTGGAGGTCGAGATCTGCGGTATCGAACCTCTCCGGTTGAGCTTTTCCGGGCGGACAGGCCGGCAGTGGTTTGGTCAACGCGCTGGGAAGCCGATCCGATGAGAACAGGGATAATTTGATGCGCTGGTGGTCGATGACCTGCACGGCGCGTGCGGCGCGGCGGCCATTCCGGGC # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAGGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAGACGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 43131-43956 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQE010000011.1 Nocardia cyriacigeorgica strain BJ06-0133 NODE_11_length_88348_cov_36.633806, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 43131 29 89.7 37 .C........................G.G CGCACGGAATGCGTTGGCGCACCGCATGTGTACCGGC 43197 29 93.1 32 .C........................G.. TGGGATCTCGCGTTGCTCGAATACGCCCGCGA 43258 29 100.0 32 ............................. GGCACCGGGTTCATGCCGAAGAACGTCATTGC 43319 29 96.6 32 ............................G GACCGCCGCGATGGCGGCGCCACTGGGCACGA 43380 29 93.1 32 ........T...................G ACCGTCGGCCTGCTGTTGGTGACGTATCAGAG 43441 29 93.1 31 ...G........................G CCGGGTGGGCGGCCCGGATCCGGTGGTGCAA 43501 29 96.6 32 ............C................ GACTCGGGCCCGCGCGATCCCCGGTCGTGCTC 43562 29 93.1 31 ..........T...T.............. CAGCACGGGCATCGCCTCGTGATTCCCCGAC 43622 29 96.6 32 ...........C................. CAGGTATAGTCCGCGACGCGGATCCGCGCCCA 43683 29 93.1 32 .........A..................G TGGTAGGAGACGCCGTTGGCGCTGTTGTTCAG 43744 29 100.0 32 ............................. CCGAGGCCCCAGGGGTCGCGGTATTCTTCGCC 43805 29 93.1 32 ............C...............G TCGAGCATCTGCGCGCCGACCTGAGTGACATC 43866 29 96.6 32 ............C................ AGATCGTTGAGCACGATCAGGTCCTTGAGGAG 43927 29 82.8 0 ..............T.T..A..C.....G | A [43945] ========== ====== ====== ====== ============================= ===================================== ================== 14 29 94.1 32 GTGCTCCCCGCGTAGGCGGGGATGATCCC # Left flank : TATCGCCGGCAACCGACATGGGGTGCGGACGGTCGCTGTACGAGAAGAATCTGAGGGAGAATCGACCGGTCGGTCGGCCGAACCGTTCGAGCAGGCGAAGGGGACAATCGTCTCGCAGGGATCGCTGCCCGGAGTAGGCCAGGACTCGCGGCCGACCATGCTGGCATTGAGCGCCGAGAACATCCACGCTGCACACCAGGAGATATGGACGCGATATCACCTCGCAGCCGCGAGCCACGCCGCTGCAGGCCTGGCCGCGCTGACCACTCGCGCGTATCGGCCGATTGCCGGGGAACGCCTTTGCATCATTCTCTGCACGGCAGGCCAGCTCACTCCTTGAGATTGTCCGGCCCGCCTGTATTGGCGACTCAGCACCGGAGGCCCGATGTGAGCGCACGATTCATGCGCTCGGGTCCGGTAGATTGTGCCGAGTCAGTAGAGCAGGCGCTCGAGTGGTTCAGTATGTGGTTACCGACCCGTAGAGTGCCTGGTCAGGAAGT # Right flank : GTGTGGCGAGCTGGCCGAAGCTGCGGACGCGGAACTTCGCGTGCGACCCGCATCTGATTAGACGCAATTCGCGCCAGTCCGGTTCCATGGTTCGACGACCGGTTTGCCGCTTCTACCAGTGGTTGGGGGCGTATGCGTTTCGGCTATGTTGGTCCGGCGCACGTTCCGATCCCTGGTAGCTCAGGGCCAACCGCGGGGGGATTCATGACGCTGGGAGTTGAACCCGATCAGATCAGGGCCATAGCGGCATCGTGGCGGCAAGAGGCCGACGAGGTTGGCAATCTGGCATGGTCGGCGATGGTCTGAGGAGACCGGAGAGGGCAGCGCGGTACTTGCTGCGGTCCGCGGCGCCGCGGATCCGGCGAAGCAGGTCCTGCTCCGCATCTTCGATGCCAGAAAGGCGGGCACAGCCGGGAAGATGTTCGATGTCGACCCCTACTCGAACCCGCATGTGACCGACAATCCGGAACTCGGCCCGAAGGTTGCCGTCAAATGAGAAC # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAGGCGGGGATGATCCC # Alternate repeat : GTGCTCCCCGCGCAGGCGGGGATGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAGACGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 45638-45910 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQE010000011.1 Nocardia cyriacigeorgica strain BJ06-0133 NODE_11_length_88348_cov_36.633806, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45638 29 100.0 32 ............................. TCCAGCAATGCCCCCAGTACCGCATCGGGGTC 45699 29 96.6 32 ............................C GGCACCGAGCACGCGCCGAGCCACTGTTTCGC 45760 29 93.1 32 .....................G......C GAAGCGTGGACATGCGCCTTGCTGGACAACCG 45821 29 89.7 32 ........G..A.....A........... TCCACACGGCCCGAAACGCCGTCACCCCACCA 45882 29 93.1 0 ............T..........T..... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 GTGCTCCCCGCGCAGGCGGGGATGATCCG # Left flank : ACGAACGGCGACATCAAGAACACCACCGGGCTCACAGTTGAGCAGGCCGCCCGCGTCGTCTACGACAATATGAATCTCGTTTGGCCGAACCCGGCCGAGCCGCGCCTCGACCAAGTGGGAAAAATCGGATGCCGCACCAACCCGAACTCAATGCGCAGCGAAGGACCACCCTGGCAGGTGGAGAAAAAGATGGTCAAGGAAGACCCCTCGCCGGAGCTGATGGAGCAGGTACGGGCCAACCTGGATTCCTTGACCGAATACGGTTTCGCGCTCGAGGAGTCGGCTATCACCGACGACCATCCGCTCGACCGCGTCTACACCGACGGCAACGGGTACGTCATCCAGAGCAGCATGGAGATCGACCGCAGGGTGACCGACATCCCGATTCTCGAAGTCGCTTCGCGTTCACCGTGCGCCGCGGAATGAGGCGAACTGTGAGCCTCGATCACCGGCGGGTCAAAATCTCGGTTACTGGCTGGTAGAGTTCCTGGTCAGGAAGT # Right flank : GAGGTCAGGTTGGTGTGGCAATTCGATGGATGAGGGCGCGGCGTAGAGCGCGGCGATCCGGCGCGATAGCCCGCGGGGGCACGCCGCCCCTCTCGCGAGGCAGCAGACCGAGTGTTCGTGAATTAGCAGGAAAACAAACCGGAAAATTAGGGGGACCGATCGCGTCGAATCAGTGTAGGTTCGTGAGATCAACGCCAGCTCAGTGGATTTCATGGAGTTGATTACGTCCGGCTGTGATAGCGAAGCTCGGCCGGAGTGGAGGACGACCGGGGAGTGCATTTCATGCTGAGCGAGGCGGCCAGAGCCGTTTGGGCGAAGTCGCCTGACGAGGCAGGTGCGTGGCTGCCGTTGTGGCAGCACATGGACGATTCTGCTGACGTTGCGGGATGGCTGTTCGATCGCTGGCTGGCGGCGAGTGTGGTGCGGCTGCTGGCGGCGGAGTTCGGTGGCGATCGAGATGCGGCACGGTGTGCGATGCGGTTCCTTGCCGGGGTGCATGA # Questionable array : NO Score: 3.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 55360-57392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQE010000011.1 Nocardia cyriacigeorgica strain BJ06-0133 NODE_11_length_88348_cov_36.633806, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================= ================== 55360 28 100.0 33 ............................ GGTCACCAAACCCCCGGCTGGTGAGCGGGGCGC 55421 28 100.0 33 ............................ TCGGTCCGGGGCGTGCCCGGTACCGGCGAGCCT 55482 28 100.0 33 ............................ GCTGGTTGTACCAGACCGGCTGCGAGTGGCGGG 55543 28 100.0 33 ............................ GCAGGCACCGCCGGCGACCGAGCCGGGGTGGCG 55604 28 100.0 33 ............................ GTACGTCCCGCAGTTCCACGACGCCGCCCGGGC 55665 28 100.0 33 ............................ GTCAAGAGTTTGGAGGTGGGCGCCTTCAACAGA 55726 28 100.0 34 ............................ AGGAGAAAACCAATGGATACCAACGACATTCGCC 55788 28 100.0 33 ............................ GGGGCAACCATGCAGAAGACAGCTCGCCTGCAT 55849 28 100.0 33 ............................ GGCATTAGGGCACACCTGGGAGCCTGCTAAGGG 55910 28 100.0 89 ............................ CCAGCCGCTCTGGGTCGAAATCGCCGCAGGCCTGCGGAGCCGGGTAGCCGCCGGCGAATGGCGCCCCGGCGAACGGCTACCGCCGATGC 56027 28 100.0 33 ............................ GTGGGTGATGGCGAGGTAGCTGCCGGGGGCGAG 56088 28 100.0 33 ............................ AGCGCACTGGTATTACGGCGCTGCCTCCACGGT 56149 28 100.0 33 ............................ GCCCTCGCGGCCACGCTGCGACCCGTGCATGCC 56210 28 100.0 33 ............................ CAGCAGCCCCGGCGGCGCGCCCAACGCGGACGC 56271 28 100.0 33 ............................ GGACAGGTACCACGCACAGCTCATTCAAGGTTA 56332 28 100.0 33 ............................ CTCGCCGAACGTTCCGGCCAGCCGCGATGCATG 56393 28 100.0 33 ............................ GACTGAAACAGCGGCTCGGTGCGTGCTCGGTGC 56454 28 100.0 33 ............................ TTGGATCGACGTATTCAGGCACTGGCACTTCGA 56515 28 100.0 33 ............................ GGATTCGCCCGCCGGACTCGAAATGTTCACGGG 56576 28 100.0 33 ............................ TCGGGTTGGGCAGCCGCGTCCCTTTGCGCAGAA 56637 28 100.0 33 ............................ CGACACGTGGATCAAGCCGCCGAGCTACAACTA 56698 28 100.0 33 ............................ GGTGCCCGGCCAAACGCCGTACACCAGGGGTAG 56759 28 100.0 33 ............................ CGCGCTGTCGCGAAGTTCGTCGAAGACTTCATT 56820 28 100.0 33 ............................ GTTTGTCCGGCAGTTGGGGCGGACTGGTTCAGG 56881 28 96.4 33 ..................A......... GCGGTTGTGCTCGCGCGGCTGTGGCTGGCGGGA 56942 27 92.9 33 ..............G......-...... GCTCGGCCCCGGAGGACCGCGGTTCTCGCAGCG 57002 28 92.9 32 ............C.G............. GGCAATGGAGCGCCGCATCAAAAGGCGTACCT 57062 27 89.3 33 ............C.G.....-....... GGTAGGCGGCAGGGGTGCAAAGGGTTACTCGGG 57122 28 92.9 33 ............C.G............. CCGGCGCAGGTTCGCGCGGTAGTCGCCGCGCAG 57183 28 85.7 33 ............C.G.........GC.. GGCTAGAGTTGATGGGCTGGGAGGTTGTGGTGG 57244 28 92.9 33 ............C.G............. CGAACCCGTTGGTGGCACCGAATCGGGTCGGCT 57305 28 92.9 30 ...T..........G............. CATCAGTCCCGCAGCGCCGTTGGACGAGAT 57363 28 78.6 0 ...T.T........G......T..T.G. | C,C [57365,57387] ========== ====== ====== ====== ============================ ========================================================================================= ================== 33 28 97.4 35 GTGCTCCCCGCGTATGCGGGGATGATCC # Left flank : TCCCACCCGGTCTTCGTGGGCATCTGACCAGGTGGCTCCTCGAACTCAGCCCGGGGGTCTTCGTCGGACATATTTCGCCGCGTGTCCGAGAGTTGATGTGGGACAGGATCGTCGAATTCGTCGCCGATGGCCGAGCACTGATGGTGCACACAGCACGCAACGAGCAGCGGTTGGTCTTCACGGTCCACGGTCACGACTGGACACCCGTGGACTTCGACGGGCTGACCCTCCTGCGCCGCCAAACTGTCCCCGATTACATTCCGGTCTATCAGCACACTCCCGCGCAGCAAGCGACCAGATCGGCCGAGCATCAATCCGAAACCGTCTGGCGCCGCCGAACCGCCCGCCGCAAGTTCAAACCGAAACCACCGAAAGATACCGGTAGCGGATGATCACGTTGAGTGCCGCAGCTGATCTCACGCTGGAGCACAAGGCGAGCGGCGTCGTCGCAAGTGGTTCAAATTCGTGTTACTGGCCGGTAGAGTGCCTGGTCAGGAAGT # Right flank : CTGAGGCTGGTGTTCGGTGCTGCGCTGATGGTTGGCATGGCAGTCATAGCGAGCTAACTACTGACCAGCGCGCGCTGACGGCTAGGGACTACAGTTGATGGTCTGGGAGGTTGCGGTGGTCGGATGACGTTCCGGCTGCGGCGTGGAGAGGTGGTGGCATGACTCAGCATCTGGGCGAGGCGAACGTCGAGCAATCGGCTGCCTCGCGGCCCGGCGGTGCGCCGGCCACCTCGTCCGATGGTGCAGCGGCTCAGCCGGCGCGACCCGCGACCCCAGGCCCCAATCCCGGTGTGGTGCGCCAGCCCGGTGCGGCGGCGGTGCCGACCTCGGCGTCGCGGCGGGTTCGGGCGCGGCTGGCTCGGCGGATGACCGGTCAGCGCGGTATCGCGGCGGTCAAGCCGGTGCTGGAGCCCTTGGCCACCGTGCATCGTGAGCTCTATCCGAAGGCGAACCTGACGCTGTTGCAGCGGGCCTTCGATGTCGCCGACGAACGCCACGCC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTATGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGAATGCGGGGATGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //