Array 1 7374-6266 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMVQ01000072.1 Pseudomonas aeruginosa P49 contig00072, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7373 28 100.0 32 ............................ TGCAGAAGCAGTGCTGCACGATCGTTGATGTG 7313 28 100.0 32 ............................ AGGAACTGTTCGTGCCGCGGCACCCGTTCGCC 7253 28 100.0 32 ............................ ACCGTCTGGCCTTCCTTGGGCTCGGCTGGAAG 7193 28 100.0 32 ............................ TAGAGCGGGCTTTCTCGTTTCTGGAGAGCCCG 7133 28 100.0 32 ............................ TTCTTGCCGGTCACAGTTGCCGAGTCAGCCGC 7073 28 100.0 32 ............................ GATCCGGCGATGGAGTGGAAGCAATACCAGTG 7013 28 100.0 32 ............................ TCGGTGGTGTATCCCTGCTGGGATGGCTTGCC 6953 28 100.0 32 ............................ TCTACGTCCGCCAATTCTCTTGGCCCGTTCGC 6893 28 100.0 32 ............................ TGGGTGGCCGACATCGTTGCGTCGAACTCGTA 6833 28 100.0 32 ............................ GCATGCTGTCCGGCCTGTTGATCGGCCCGCTG 6773 28 100.0 32 ............................ GCAACGCCGGCCGAAGACCAGACCATCACCGA 6713 28 100.0 32 ............................ TTCACCGTCACCCAGTCCTGGGTGGCGTAGAC 6653 28 100.0 32 ............................ TTGGCAGCTGTAGCCAGAGCCGGATGCGAAGC 6593 28 100.0 32 ............................ AGAGCGCTCTGGTGGACGGCTGGGTACGACGA 6533 28 100.0 32 ............................ CGTATCAGCGGGCCGCCAATGAAACCGTCGAG 6473 28 100.0 32 ............................ AGCGGCAAGTCGATTTCGCCGGCCGCTACCTT 6413 28 100.0 32 ............................ AACGCCCAGCGCCAGCGGGAGAAACGCCAGCG 6353 28 100.0 32 ............................ AGTTCGGGACACTGCTCCAGCAGCAGGACGCA 6293 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCAGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGACCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37501-38608 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMVQ01000063.1 Pseudomonas aeruginosa P49 contig00063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37501 28 100.0 32 ............................ TTTGCTCACAGACTTGAACCATCCAAGTAACT 37561 28 100.0 32 ............................ TATGCCAGCGGCAACAGCACGCGAGGCTTGAT 37621 28 100.0 32 ............................ ACTAGCAAATCTTGGACGCGCTGGTTGAGGTT 37681 28 100.0 32 ............................ AGGCGCCCCCGGGCGCGGCCAAGCGCGTAGGC 37741 28 100.0 32 ............................ AGCACGCTATCTGCACATTCCCACCGGCATTC 37801 28 100.0 32 ............................ TTCTTGTGGGCGAGGGCGGCGGGCTGAAAAGT 37861 28 100.0 32 ............................ ATGATGAGGACGATACCCTCATCTCGGCGTAT 37921 28 100.0 32 ............................ TGGATGGCTCAAAGCTGTGAGCAAGGGCCGGC 37981 28 100.0 32 ............................ AGATGGCGCAGGCAAGGGCAATACAGACGGTC 38041 28 100.0 32 ............................ GTAAGAAGGCCTCGAAGATTTTCACGCTCGAT 38101 28 100.0 32 ............................ AAGCTGCGAATGTCCCCTAGCCGGTACAGCGG 38161 28 100.0 32 ............................ ACACTGACAGCGCGATCAAGACTGAGGCGAAA 38221 28 100.0 32 ............................ ATGGAGCTGGGCAACGTCGTCAGCACCCAGGT 38281 28 100.0 32 ............................ TGTCGGCCGGCGCCGTGCGCCAGTCCGGCCAG 38341 28 100.0 32 ............................ TCCGGCGCACTGCGGCAATCCTGCCGGCCGAG 38401 28 100.0 32 ............................ TGTTCGCCCGAACCTTCGCGGACCGCTTGTCC 38461 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 38521 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 38581 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGATTAGAGATAGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48903-47133 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMVQ01000063.1 Pseudomonas aeruginosa P49 contig00063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48902 28 100.0 32 ............................ AATTGCTCCGGGGTCAGGCTGCTGGCGACCAT 48842 28 100.0 32 ............................ CTGATAGCTGGAGGTCTGGAAAGAACTCCACT 48782 28 100.0 32 ............................ TCTAGATAGGTGCGCTCGATGGCGTTGCCGGC 48722 28 100.0 32 ............................ AGATGACTCCACCGACTGACCACTCATCAATA 48662 28 100.0 32 ............................ AGTCTGGCGGCTCTACGTTGTGGTCAGAGCGT 48602 28 100.0 32 ............................ TGAAGAACTACCTGGGCCAGGCCAAGCCCATC 48542 28 100.0 32 ............................ ACACCACAGCGCCGAAATGGTTTGTCTTCTTG 48482 28 100.0 32 ............................ GGTCAGTACCACTCGATCTGTGAGGTGAGCGA 48422 28 100.0 32 ............................ GTACCCATGAGCGATTCGGCCCGAGAGGCCGG 48362 28 100.0 32 ............................ TGAAAGCCATCATCGCGACCCTGTCGCTGAAA 48302 28 100.0 32 ............................ TCCCTGAGGCGCGGGTTCGATGCTGATACCGT 48242 28 100.0 32 ............................ CAGGAACTCAACGATGAACGCGACCAGAACGC 48182 28 100.0 32 ............................ CAGTACAGCCCCGCCCCCCATCGGTAGATAGG 48122 28 100.0 33 ............................ AATCTGAGCGGTAACGTCACCCTGATCGACCCA 48061 28 100.0 32 ............................ TGAGCCTGACTCTTGCCGAGCAGGTCCGCGAG 48001 28 100.0 32 ............................ AAACGGATTTCGATCCCACTGATGGACGGTGA 47941 28 100.0 32 ............................ ATTTACAACCGTAAAACGAAAACCACGGAGTC 47881 28 100.0 32 ............................ ACGCAACGACCGTCCGCCGTCGCGTCGCCGCC 47821 28 100.0 32 ............................ TGGGCGAGATCGGCGCGTAGCCGTAAGGCGAG 47761 28 100.0 32 ............................ TTCCCCGGCGAGATCCAGCCGCCCCAGGACGG 47701 28 100.0 32 ............................ AGAACGAGCCACGGGTATCGGCCTTCGACTCA 47641 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 47581 28 100.0 32 ............................ AGTTGGCGAGCTGGGCAACGTTGCTCGTCGAA 47521 28 100.0 32 ............................ ATGTTGTTCCTGGCCTCGGCGATCTTCTGGTC 47461 28 100.0 32 ............................ CGGATGAACTGCTCAGTGTTCATGCTGCCACC 47401 28 100.0 32 ............................ AGTTCTTCGTCAAGCACGTAGGGCGACTCGGG 47341 28 100.0 32 ............................ ATGACTATCTCGTCGCTTGAGATTTGCAGCCC 47281 28 96.4 33 ....C....................... TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 47220 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 47160 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //