Array 1 8508-7382 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBA01000010.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N25385 contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8507 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 8446 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 8385 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 8324 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8263 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8202 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8141 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 8080 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 8019 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 7958 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 7897 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 7836 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 7775 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 7714 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 7653 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7592 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7531 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7470 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7409 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8887-10428 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBA01000005.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N25385 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 8887 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 8948 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 9009 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 9070 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 9137 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 9198 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 9259 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 9320 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 9381 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9442 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9503 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9564 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9625 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 9686 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9747 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 9808 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 9869 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 9930 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [9972] 9972 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 10033 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10094 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10155 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10216 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10277 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10338 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10399 29 96.6 0 A............................ | A [10425] ========== ====== ====== ====== ============================= ====================================== ================== 26 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //