Array 1 2536864-2538283 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025830.1 Akkermansia muciniphila strain EB-AMDK-15 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2536864 36 100.0 30 .................................... TACAAAATCTCCGTAGGGTCTGCGTCATCC 2536930 36 100.0 30 .................................... TTGACCGCCGAGGTAAAGTACTGTATGTCA 2536996 36 100.0 30 .................................... ACAGGGACTGGCCGCATGTCGATTGCACCG 2537062 36 100.0 30 .................................... CATACCGGATTGTTTCTGCATAAAACACCA 2537128 36 100.0 30 .................................... CTGACGATATTTTTAGGGGTACGGGTGACG 2537194 36 100.0 30 .................................... AGCATAGCATCGAGGAAAACAATGCCGATA 2537260 36 100.0 30 .................................... AAAAATAAAATTCTCAAAAGGTGTGATCTT 2537326 36 100.0 30 .................................... GAAATAAAACAATGAGCATTTACGACGACC 2537392 36 100.0 30 .................................... CAATCGATTATACCCCCGCAACGCACCTCA 2537458 36 100.0 30 .................................... ATGACGCACAGGCCCCAGAATCATGGGATT 2537524 36 100.0 30 .................................... CAAGGGGGTTATACCCGGCTTACTAGTCTG 2537590 36 100.0 30 .................................... TTGTATACCTGTAGGGGTGCAATTGACATG 2537656 36 100.0 29 .................................... AAGCCATCGCGCTCGTCACTTCTTTCACA 2537721 36 100.0 30 .................................... CTTGGGACGTTAAACCGTCCCTTGCGGATT 2537787 36 100.0 30 .................................... CAACTGCCTTCTCTGCCATCGTGGGGAGCT 2537853 36 100.0 30 .................................... CCTAAGCGTCTGTCATGCACAATTGCGAGG 2537919 36 100.0 29 .................................... TTCTGCTTGGGCACTATCGCCTCCCCCTG 2537984 36 100.0 30 .................................... CAACTACCCCTAGGTGCTTGGTGTGCTGCC 2538050 36 100.0 30 .................................... GGTATTGAGCCAGCATTCACGTTCATCTTC 2538116 36 100.0 30 .................................... CACCTCAACCCATGATTGAAATTTAGATAG 2538182 36 100.0 30 .................................... CTACCGTTGAACCATACACCATTGAGCCGA 2538248 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Left flank : CTGACCTGGAAGAACATCAACCTGAAATCCGGCCTGGTTTCACTGGCGCCCAGCCATACCAAAACAGGCGGGAGCCGCCATGTTTCCATCCTTCCCGTGCTGGGCGCCATCCTCAGCCGGACGTCTTCCGCCGGTTCCCCCTCCCGTCCCGTTTGCCCGCCCAACTGGGAAAAGAAATGGATGGAAGTAAGGCGCCGGTCCGGCATCCTGAAAAAAAGCGGATGGGTGCAGGACGTGCTGAGGCATACCTACGCCTCCTACCACCTGGCCCATTTCTGCAATCAAAACCTTCTTCAGAAGGAGATGGGGCACTCCTCCCCCTCCCTGCTTTTGGCCCGTTATCTTAACATGGACGGAATCACCTCCGCAACCGGCGCCATGTTCTGGACGCACAGCTTTGTTTCTCCCGTTCCGTTAAAGAAAGACTGACAAAAATCCGTCTGGAATTGCGCGGCCAAAGGCGGAGCAATCCCCTGCTCCATCAGACCGGAGGCGCATTT # Right flank : TAGATACTGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCATCCGATATTTTTACCAGAGGAGCATCTGCTGAGGCAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCCATTCTTTCCTGAGTAACGCACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATATTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATAAGCCATGGTTCATACGGTCCGGATTGTCCGGCAAGAACTGCTTTGCGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCAGCTGTTTATCCCGGTACATGACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 2613920-2613355 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025830.1 Akkermansia muciniphila strain EB-AMDK-15 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2613919 31 87.9 34 .........T-..C.-................. ATGTTGTCCACGATGTAGGTAAAGCCCTTGTACG 2613854 31 87.9 35 .........T-..C.-................. TTTGAAAATTGACGCGCCCTTGCTGTTTTTTTACA 2613788 33 100.0 33 ................................. ATGTAAAGGTCGACATGTCATGACACAGAAAAA 2613722 33 100.0 34 ................................. TTCCTACGGAGAATACGGAAGGGACAATGCCGAT 2613655 33 100.0 34 ................................. CGGTTGTCCGGGGTGCCGAAGGAGATACCACCTA 2613588 33 100.0 34 ................................. ACTTTGGATTTTCAAGGCATGAATCAGGTTCCCG 2613521 33 100.0 34 ................................. CGGATCATAGCCGCGCTGGTTAAGGTGGTAGGTA 2613454 33 100.0 32 ................................. CAGGACGCGCGGGGAATTTTCCCCACGTTGGC 2613389 33 100.0 0 ................................. | GC [2613366] ========== ====== ====== ====== ================================= =================================== ================== 9 33 97.3 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCCGTAAAAATTCCGTTGATGGCCTGTCTAGCCTCCGTTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGTAAAAGCATCATGTAAACCGCAGATATTTTTCGCAGGTCGCTTCGGGGACACGGCAGTACCGGGATGTCTCTTCTTTTGTGGAAAAGAGAATGAAACGGTTTCCGGGGAGAGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTCCCAGCATCGTGTACAGGCCTAGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTTTCCCGGTCTCCCTTCCGCCGACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTTCGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTCACGGCCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTTCAGGA # Right flank : GGAAGCCTCAGTACATCACACATCGCCGCCTGTAGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTTCAACTCCTTAAAGAACCCAATTTTCAAAAAATTCCAGGATTTTTGAGGCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCTGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //