Array 1 4633217-4634892 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADDXI010000001.1 Escherichia coli isolate SC456, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4633217 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 4633278 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 4633339 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 4633400 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 4633461 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 4633522 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 4633583 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 4633644 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 4633705 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 4633766 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 4633827 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 4633888 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 4633949 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 4634010 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 4634071 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 4634132 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 4634193 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 4634254 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 4634315 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 4634376 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 4634437 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 4634498 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 4634559 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 4634620 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 4634681 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 4634742 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 4634803 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 4634864 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4650394-4651641 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADDXI010000001.1 Escherichia coli isolate SC456, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4650394 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 4650455 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 4650516 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 4650577 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 4650638 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 4650699 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 4650760 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 4650821 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 4650882 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 4650943 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 4651004 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAATCGTTATCCCC 4651065 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 4651126 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 4651187 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 4651248 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 4651309 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 4651369 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 4651430 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 4651491 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 4651552 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 4651613 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //