Array 1 421837-423671 **** Predicted by CRISPRDetect 2.4 *** >NZ_QADB01000003.1 Listeria monocytogenes strain LM-F-102 LM-F-102_scaffolds_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 421837 36 100.0 30 .................................... CACAGATTTGCGAATTCGATTGAGCGACAT 421903 36 100.0 30 .................................... TATTATTTACCGCGCAGAGCAAAGCAAACA 421969 36 100.0 30 .................................... AAATAACCGATTTACCTGCACCTACCCACA 422035 36 100.0 30 .................................... TAACGATCTCGTAAAGTTCGCCTTCGTCGA 422101 36 100.0 40 .................................... GCCGTTATTGAATAAACCTATCGACCAGTTGTTTAGAGCT 422177 35 80.6 29 A.G...TT-T.N........................ GCCGTTATTGAATAAACCTATCGACCAGT 422241 36 94.4 30 TG.................................. TGATTTAAACACTTATATAAACAAAGAGAG 422307 36 100.0 30 .................................... AAGTATGCCACATATCCCATTACCTCATTT 422373 36 100.0 30 .................................... TGAGGGCTACATTCAGCTAGAAGAAGAGTT 422439 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 422505 36 100.0 30 .................................... TCCCTATTCGATATGTTACTGATAGTTATT 422571 36 100.0 30 .................................... TATATCTAAAGGAAATTAGGGTTGTGACTA 422637 36 100.0 30 .................................... CGTTGGCAAGAAGCCTTTTTTCACTGGTGT 422703 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 422769 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 422835 36 100.0 30 .................................... CGGTTGTTTGATTATCTTGTGTTGCTTTAA 422901 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 422967 36 100.0 40 .................................... GCCGTTATTGAATAAACCTATCGACCAGTTGTTTAGAGCT 423043 35 80.6 29 A.G...TT-T.N........................ GCCGTTATTGAATAAACCTATCGACCAGT 423107 36 94.4 30 TG.................................. CGTGTGATACGTTAAGGTCAATACTAGCAG 423173 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 423240 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 423306 36 100.0 30 .................................... ATTTATCTTCCGCATTTCTACGTGCTTTTA 423372 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 423438 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 423504 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 423570 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 423636 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== ======================================== ================== 28 36 97.2 31 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAATTTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGA # Right flank : AGAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 277135-277615 **** Predicted by CRISPRDetect 2.4 *** >NZ_QADB01000001.1 Listeria monocytogenes strain LM-F-102 LM-F-102_scaffolds_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 277135 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 277199 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 277262 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 277326 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 277391 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 277455 29 100.0 37 ............................. TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 277521 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [277544] 277587 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 94.0 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAGTTATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATTTCTATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTTGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTAATACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //