Array 1 4564-5384 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAARX010000127.1 Escherichia coli strain 838 Ec-838_contig127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4564 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 4625 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 4686 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 4747 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 4808 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 4869 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 4930 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 4991 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 5052 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 5112 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 5173 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 5234 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 5295 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 5356 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-1298 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAARX010000149.1 Escherichia coli strain 838 Ec-838_contig149, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 111 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 172 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 233 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 294 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 355 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 416 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 477 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 538 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 599 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 660 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 721 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 782 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 843 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 904 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 965 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 1026 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 1087 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 1148 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 1209 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 1270 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATTGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //