Array 1 47196-48950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXWX010000027.1 Phormidium tenue FACHB-886 contig27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 47196 37 100.0 34 ..................................... TCACCTGCCTGAAATCTCAGAGTTCAATAGCTGG 47267 37 100.0 34 ..................................... TCTATAAAGTTGATCGAGTAATTCATCACGCTTG 47338 37 100.0 35 ..................................... TCTTCGTTCCGGGCGTAAGCCCCCAGCAGAGCTGG 47410 37 100.0 35 ..................................... AGGAGAATTCAAAATTGACATCATCGGGGGTAGTT 47482 37 100.0 35 ..................................... TTGTTTTGAATGTATTTCTGAAGTTCATAGAATCG 47554 37 100.0 36 ..................................... CTATCGCAGAAGCGGCGAATCGGATTGAATTCTTAG 47627 37 100.0 34 ..................................... GTTCATCTTGGAAATCGTACCGTGAAACGTACAA 47698 37 100.0 35 ..................................... CTCCGATGATGGTTCATTCGATGGCTTCAAAGAAT 47770 37 100.0 34 ..................................... CAAATAGAAGGGTTGAAACAAGCGCTAGCATCCA 47841 37 100.0 35 ..................................... GTTTCTCAAAAACCTCTTTAACATTAAAACCTAAA 47913 37 97.3 34 ..A.................................. TTCTTTTATAGCTAAATTTAGGAAGAAATTAAAA 47984 37 100.0 34 ..................................... GAGTATATTGTCAGGTTTGGAGTTAAGCAGACCA 48055 37 100.0 35 ..................................... TAACTCGTTGCTACCTAAAGGAATTACGTACCGGG 48127 37 100.0 35 ..................................... ATTCTGTTACTGGTTGGAGGTATGGCTGCGTTACT 48199 37 100.0 35 ..................................... TTGAAAGCGGCATAGTTTCGTCATTCGCATTACAG 48271 37 100.0 35 ..................................... AGTATCGTTGTAACGTCAAGCGAGGCTAAGCCTGT 48343 37 100.0 34 ..................................... ATCTTTTCTATTCCTCCCTCTTTATCTGGATCTT 48414 37 100.0 34 ..................................... TCACCATCGTCGCTTTTTGCGTCGATGGATCGAG 48485 37 100.0 35 ..................................... AAGACAGAGCGTCCTGAGTCCAAGATTCCGATCAT 48557 37 100.0 35 ..................................... GAGGTGGAGGAGTTTGACGATATCGAAGAGAAGAC 48629 37 100.0 34 ..................................... ATCGTTTGACGTATACGGGGCTGCGCTGACTGAG 48700 37 100.0 35 ..................................... CCAGAGGCTTACGGTTAGCCCGTACAGTGAGACAA 48772 37 100.0 34 ..................................... CAATCAACTGCGCGAAAACAAGCCTCCCGAACCT 48843 37 100.0 34 ..................................... ACTTTGCTGCTACATGCTGCGGGAGGGGTCGGAA 48914 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 25 37 99.9 35 GCGATGATCACTACCAAACCCTTTCAGGGATTGAAAC # Left flank : TACAGACTTTCTACCCTCAAATCCCTGCTCTGCAATAGTTTCAGCCTAATTGCACTTCATGACAGCGACCCTTCAATCACCCCTAATTGAGGCGTGAAGCAACACAAGCGCACTTGAAGAAGCGCCCAGATCTATTGTGTACTTGCTGTAATAACAGTAGCCCCAAAGTTCGCTAGAAAACGCAGTTGGGGTGCTTGTAGCCGAATTTTTGGAATTCCCTTGACACTTTTGTAGTACGTTGTAGTATAGTGTAGTAGAATGAGGCTAAGGAGGAAAGCAAATTGATTGCAATAACAACCGATCGCTCAACCACCCATGTACAAGTTGAACCTTAGGTAAACCGCTTCTTGCGGGTAACGCTTCTGAACCTTGAAAACTGAAGAAATTTCTTGATCCAAGATCATGTGTCATTTTGTCTTAGATCCAAGACCATCTGCCCCTCTACACCCTTTCAGGGATTGAAACAATTGAATCAAAGACAGTCGTGTGTATCACTCGGA # Right flank : CGATCACCTACGGACCACGGGCACATAGAAGCGACGGCGATGATCACTACCAAACGAAACTGTCAGATCTGGGTACTCAAATCGCGGCTTTTTTTGCACATTCCTATCATTACAAGCTTTCTCTCTTTTATCTTTAATTAGATGGCTCGAAAGAGTTCTTGCAATTTATTCACTCGTTTAACAAATTGTTCTCGTTGCTTAGACAGAGACACCAACTCTGCCATTCTCGTTCTCGGTCGCAAAAACTGCTTCACTTCATCAAATGCTTGACAAAATCGCTTCGCACTCTCAATCGCTCCAAAACCAAGCATCGAATAGTAACGTTGCTTGATCCCTCGATGACTCTGTTCAATCAGATTCCCAAAACAACCCCTCACTTTATGTTTAACGTCTGAACCCAATTCTTCGCAAATCGCTCTTGGGTACGAAGTCAGTCCATCCGTTACCACTTGTTGCGGTGGTTGTCCTGCAACCTCATGTGCCCCAGCAAAGAAGGCTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGATGATCACTACCAAACCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 63-1741 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXWX010000042.1 Phormidium tenue FACHB-886 contig42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 63 37 100.0 34 ..................................... CTCGCCTCAGCAGGACACGGCGCGCCGGACATAG 134 37 100.0 34 ..................................... CCAGCGTGATCGCCCCATGCCAAAGATCCTTATT 205 37 100.0 35 ..................................... GTGGTAGTGGATTTCGGAATCTACATCACAGAAAG 277 37 100.0 34 ..................................... GTAATGCAAGTCCACAATCGTAGAGTTGCAGAAG 348 37 100.0 35 ..................................... CTAATTCCTTCTATCGCGCTCGTAAACGATAACGC 420 37 100.0 34 ..................................... AGTACACTCCCAACCAAGGTGCTGTGCGTTCCAG 491 37 100.0 35 ..................................... CTGGAGATATCCGATAACGATACCAATTGGGCAAT 563 37 100.0 34 ..................................... TCATAAGGGGCTTTACGTCCTCTTCCTCCTACTG 634 37 100.0 35 ..................................... TGGATGTCGAGCGTCTGAGTGTGCTTACTGTAGGG 706 37 100.0 34 ..................................... CGAGCCGGTTGACATGGGGGTGGGTGGGGGAGGT 777 37 100.0 34 ..................................... TTGCTCTGTGGATAACCCCCCCTGACCCCCCAAG 848 37 100.0 35 ..................................... TGAAGCGCGTCCAACGCCGTTTGCATCATTGATTG 920 37 100.0 34 ..................................... TGATACTTAGTGAAACCATAATAAATATCATAAT 991 37 100.0 34 ..................................... TAACTAAGTGTGTTTTTCTTACGGGGACTCTTCC 1062 37 100.0 34 ..................................... ATCCCTAATCTACCATTCAAACTCCTGAGCGCAA 1133 37 100.0 34 ..................................... TGGAGGGGTAGCCGATGCCCGTTAAAACTGCTGC 1204 37 100.0 34 ..................................... GAAAGAAAACAGCTTAGATGACTGCCGATCGCCG 1275 37 100.0 34 ..................................... TAAAGCAAGCGCTCGCTAGTAAAGCTGGTATAGA 1346 37 100.0 35 ..................................... CTTAGGGTGAGGCGGCCTAGTAGAAAGTTGGTCTG 1418 37 100.0 35 ..................................... TAACCCAATGGACGCCTTAATTCCGGTTCACAAAC 1490 37 100.0 34 ..................................... AAGACTCGACACTGAAGCGAATGTCCGGTTGTTT 1561 37 100.0 35 ..................................... GGAGCAAATCGAGATGGGGGGACTTGAGGATCAGC 1633 37 100.0 35 ..................................... GAGATCTCCCAATTGCAACAAGCCCAAAACGCCGC 1705 36 78.4 0 ....................GC..G.CT..-CA.... | T [1725] ========== ====== ====== ====== ===================================== =================================== ================== 24 37 99.1 34 GCGATGATCACTACCAAACCCTTTCAGGGATTGAAAC # Left flank : CTACCAAACCCTTTCAGGGATTGAAACGGTTGGGAACTGCCAGGGGAGAGCTGAAAATCCAGG # Right flank : CTAAGAAGCTGGAAAACGGCTGAGGACAATAAATTCACGCTCGAAAGAAGCATTTTGTTGTCGCTTGGATGCAATGGCAGGTTGAGGGTCAGGCAGACTTGAGAGAAACGGATAAACCTGAACTTTCCATTGCTGGGTGATGGCAAGACGAATCCAATTCCAACCAAGCTTGAGATAACTCATCCCCCGATTCCAGTGGGCATCGACTTGGCGACGCTTGCCTGAAATGACGACCTGTACTCCCTGGAGCACCAGAAACAGCATTGTTAAAGCAATCACTCCGCACAACTGGGAGAGGGCAAACTTGTCCCGCAGCCTAGAGGCTTCGAGATTGAATCCGTTGGACTTCAAATCCAAAAACGATTCCTCCACACAAAACCGGAGTCGGTATTGAGTAAAGGTTTGCAAGTTCGTCGGTTCGTCGCTCACAATCGTCCAGTCCTCACCACTTTGCTTGTCGTGGGCGAACGCTAGATAAACATCGGGATAAGGTTTAGTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGATGATCACTACCAAACCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 18992-19392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXWX010000048.1 Phormidium tenue FACHB-886 contig48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 18992 37 100.0 36 ..................................... AACGTGAAACCCAGATGGCAATTGCTTTTAGCAATC 19065 37 100.0 37 ..................................... ACGTCCTGGGAACTTGTCCATCTCAGTAATGAAGTAG 19139 37 100.0 35 ..................................... TAGGGCATGGATCAAACCAGGCTTATGGAGGGAGG 19211 37 100.0 35 ..................................... GAACATGAGCAACGCTGTACTCTGGCTTTTCTGGC 19283 37 91.9 34 ..........C...........CA............. TAGCCGATAAACTTTAGCCAGTGGCAATCCGGGT TG [19314] 19356 37 83.8 0 .....AG...C...T.T.....C.............. | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 95.9 36 GTTGCCAAGATCCTCCCAGCTATGGGTGGGTTGAAAG # Left flank : CTAGCTAAATCCATCTGAACCTTGACAATTCAGTCTTGTTTGTTACCGGCGCGTTGCGAAAGCTCCACCAAATCTGGGTCAGTTTTGTTGCTTTCCGTCCCCGGTAGCTGTCCGGCTTCGCCAGTGATTGTGGTGTGCTTCTAACCTGCCTTGTGCAGGCAGCGCCGCCCGTCATGAATACAGTTGCGCCGTCTGTAGGAGGAAGCAGTTCTTGTGATTAGTAGCTCAGCACTTCTAATTATAGGGATACAGAGGTACATGTTGTGACAGCTACCATACGCCCCAAGCATGGGTTGAGCCTACCCTTTTTTTGTATTTGGCGAACCAAAGCGAGGTCAAATTCTCCAGTCGGTTTGCCAAAGCCTGAAACGCCTCTGGCTGCTTGTCAGTAGTAGCCAAGACTAATTTATTTCCTGAAGTTGTACTTTTTCCGATCGATTACCGATCTTGGGCAAAAGTGCGCCGGGAAGCCAGTACTGATCAGCGTTATACGGCTGGGA # Right flank : GAAGCTAAATTCCGGCATGATATTGGCAGCCGCAATGGGTTCCTAATCCCCCCTCTCACAGATGGATATGAAAGTAACTTGGGTGTTTCGCAGTGGCTACCGTGAACTGAGTTGCTAACATCATTCCTGCCATGAACGTAGCGACTGCAATCATATTTTGATTTGGAATTAGTGGGTAGGTTGAAAGAGGCAGAGGTCTGCAAATATCTTCACGATGCGTTGAGTTATGGCGAATAGCAAGGAGTCATCAACATGGAACAGCGAATCGCAAATTTCAGCAATCACATTTGGCAGATAGATACGGTAGCGCTTGACAGGAAATTGAGTCTACTCGAAGGTCGTCCTGTCCTGATAGTTGTTCAAGATGTCTACTCGCAGTGTATTGCAGGTTACCGCTTTGGGGCTGAAAAGCCCAACGCATCGGCAATCGCCGCACTGCTGTATGCGATATGTCCGAAAACCTACCTAACAAACTATGATTTGGCTGGGGAATGGACAAT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCCAAGATCCTCCCAGCTATGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.90,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2087-3852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXWX010000117.1 Phormidium tenue FACHB-886 contig117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2087 37 100.0 35 ..................................... CGAAGATTTCGAGGATCCTAAGTGGTACTTGCCGG 2159 37 100.0 34 ..................................... CGGTTGGCGGGTTTTCAACCTGTGCTATGAAATC 2230 37 100.0 35 ..................................... CGTGAGTCGCGCTGCTCAGAAGCTTGTTGCGAAGC 2302 37 100.0 35 ..................................... GGCAACTCAAGCAACCATCCAAAAACAAATCAAAG 2374 37 100.0 35 ..................................... ACTTGCTTAGGTGAGCATACTGCAACTGAATCAGG 2446 37 100.0 35 ..................................... CTTGATTTGAAATCCGCCTCTCTTGCTGCTAAGTA 2518 37 100.0 35 ..................................... AAGAACAACCGTATCCGTTGCCACAACCATTGAAG 2590 37 100.0 35 ..................................... TTTAAGCTCTCCTGCGTCCATCGTATTCTATGGTG 2662 37 100.0 35 ..................................... AAGTCAATCGAGTCCGAAATCCAGCGGTACCAGCG 2734 37 100.0 36 ..................................... CTCTTTACGAGTGTGTTGCAGCTCTCTAGTTTTCGG 2807 37 100.0 35 ..................................... AAAGAGTAGCTAGGCATCAGAAAAAGAACTTTAGG 2879 37 100.0 35 ..................................... AGAACTCTTTCACCTGGAGTTAGAGCAGCTAATAC 2951 37 100.0 34 ..................................... GCAAAGCCTACAGCGCGACCACTTTTGATTTCTT 3022 37 100.0 36 ..................................... TTTGAACTGATCCATTAGCTGTTGATGATCAGACGG 3095 37 97.3 35 ...............A..................... AGTTTAACGGTATTGTGGCGATGCTCTGCCATCAC 3167 37 100.0 34 ..................................... CCAGTTTGAAAGTAGCTGGTACGCCAGCTTGAAG 3238 37 100.0 38 ..................................... CTGCAGCAATGCGCAACTCAATCTGTGAAAAATCACAG 3313 37 100.0 36 ..................................... ACGTTTGCCCAGGTATAAGCTCCTGAATCATCAGGG 3386 37 97.3 34 .G................................... AGCAAACTGGATGTAGCCACAGGATTCACCCTGC 3457 37 100.0 35 ..................................... CTAACCGGGTGCAGGTTGGAGAGCTACTGCACGAA 3529 37 100.0 34 ..................................... TCGGATTAGCTCGATCGCTCGTTCCGGCTCCATC 3600 37 100.0 36 ..................................... CCGGTCAGCTCCTGCCGCTTGGCGATCCGATCGTCG 3673 37 100.0 35 ..................................... CTCGCATTTGCAAAGAAGTCTTCGGAGACTTTCTG 3745 37 97.3 34 ................A.................... TTCGTTGCGCTGCAGGTGAAATAGTTTCATAGCT 3816 37 97.3 0 ..T.................................. | ========== ====== ====== ====== ===================================== ====================================== ================== 25 37 99.6 35 GTCCCAATTCATGTGGGACAACCAATTGAATGGAAAC # Left flank : GTATTCAAGTCTCGTCTCTTTTTCATAGATATATCTTCTCTCGATCTTGTCTTTGTTAGGCAGCTTGGAAGATCGCTTGTAATTTACTGACTCGTTCTATGAATCGTTCTCTTCGCTCAAGATAAAATAGTTGAGGGGACCAAACGATGAGGTTCAGATAGATGGGTACTTACTCACCTACTCATCCACGCAATCTTCTACCTCCCGCGTGCTCATCACCCAGCCCTTCTCGGCACTGCCTACGATTCGTGCGCGGATAAGTAGCAGTTATTTCTCAGGATGCACCGCGATGGGTTGCCAACCCTTATGCTGAAAGGCGTTAGAAGGTTTAAATTGATTTTGAGTTCCGCGCAGCGCTTGAAAGGTGCTATTAGCAAGGAGTTTGAACGCTTCCAACTGCAGTCTTCTCAAGAGTGGAGTAGCTATGATAAGGTTTTTATAGACTTCCGCGCAACACGCTTCCCAAATACCACTTCTGCGGAGGTTTGAGACCACCAGGG # Right flank : CTAATTGGGGCTATTACTACCGGAAGCGGTATGTAGTTAACATGTCAATTCTGGAAAGTGCTTACTGTAAGGCATCTCTGGGAAAACTGTTCACTATAACCCGCTCCCAGTAGTACTAGTTGTGTCGCAAATGCTTTTTAAGGACAAACAATCGATATCGTTTGCATTGCCTTAAGCAGCAATCTAGTTATATGGACCTCTCAGCAGGTTTTCTACCGACAAACAAATTCTATGAGTCGTCCAGTTTGCGAAGACCGAAGGCAGTTGTAAAAAGAGTTGCCAGGGCAGCCTTGGCTTTGTGCGTATTCACTTTTTGCCGTAACGATCAAGTTTCTGGTGTGCAATTGGGCATTCTAAGCATAGAAATTCATGCTTTACCCACGCACTACTGTCACGGCAATGTTTCATCTGCTTCCTCAGCGCCAGCTTCTACAAAGCCAGATTAGTCAGCTCCTTGATCTGCACCAGCAGGAACCCAGCTTGCGATCGACTCTCGATAC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCAATTCATGTGGGACAACCAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 18798-18960 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXWX010000059.1 Phormidium tenue FACHB-886 contig59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================== ==================================================== ================== 18798 20 100.0 51 .................... AAGAACATCATTTTTGAAAAAGAGTGAAGACCTAACATCGCAATTCTTTAA 18869 20 100.0 52 .................... AGGAACGCGCAAGTGGTTTGGCTTCACTGATGGCTCACCTCGGTGCTTTAAG 18941 20 100.0 0 .................... | ========== ====== ====== ====== ==================== ==================================================== ================== 3 20 100.0 52 GTTTGATGTCGTAAGGCGTT # Left flank : TAGGTGAAAGTCGAGACTTAGTTAATTCTATAGCTTTTGTTAATACAGAGGCAGTAGAAAAATATAATACTCTGTACTGGCTAGTAAAACGTGAAAATGGGCAATTTATACTCCCTCATTGGGTTAATCACCTTGGTCAACATGGCACCTTTTGGAAACGGTACAATTTGCAACAACTTAAGCAGATAAGCCCATCTAGCAGCAATTGGATAGAAATTATTTCTTGCGAACAGTACAATGAACATCAATAGGAATTTCAGCTTAATTTTTTACACAAAAAAGTAAAAGTATTATAAACCTTACCTCATTACTAGGTCAGAAAAACAAGTAACAATTTAGATGCTTACTAATGTTCTAATAGCCAAGAGAATTAGTTCATAGCCAACCCTATTAACTTTTATTGCTAATACTTTGTTTTTTGAACTTTAGCCATTAGATATTTGTACAATTACTTGTATATAAAAATTTTGTCGTGATTTAGTTTTGCGCTGTACACCTAA # Right flank : TGAATATTGATTTACGAAGGAGTGGATGAAAATTTGGCACCCACGCCTTTCTTCTGATGCATTTTGCATTCAATTATTCTGTGCCGAGGCTGTCCTTAAGTTTTCAGCTTCATCAGCCCTAGAAACCTCCTACCAACCAGCATCACAGTAAAATTTTTGGGTAGTCCTATTTTTTAAAGGCTAAAGAAAAATAGTCGTTTTCAGAAGTCTTGCTAGATAAAGCTTTCAGAACTTGGCTTTTTTTCTCTGACCTTTACGTAAGGGCACTACCAATTTTTGTAATCGTTCAAACGTATGGGTCCACTTCACTCCACCTAAAGCACAATTAGGTTTAACTTACGGTGTAAGCTTTACTGTGCCCAAGTGAGTTAGCGCTATCAGAAGGTAATACTTGATTTGTTTCCCCTAAATCCAAAGTGCCTTGAACCCAATCTATTTCTTTAAGGGTACGGGAACGTAAATGCTTTACTAAGGTGTCCCATAGCCTGACATCACCTAAG # Questionable array : NO Score: 3.95 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:-0.75, 7:-0.70, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATGTCGTAAGGCGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 689-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXWX010000101.1 Phormidium tenue FACHB-886 contig101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 688 37 100.0 34 ..................................... GGCATACGCCAGGCATACTGCACTGTTACCCCAG 617 37 100.0 35 ..................................... CAATATCATCGCGCCGGATCTCACAGATTCCCCGC 545 37 100.0 34 ..................................... TGTGCAAGATTGGTCGTCAGAGCAGACCGGGAAA 474 37 100.0 34 ..................................... GCGTTTTTCCACAGCCTGACGGCGCGACGATCAA 403 37 100.0 44 ..................................... TATGAGTGATGTTGTGATTGGTGCCGCCGGCTTGGCGCTCGGCG 322 37 100.0 35 ..................................... CCTTGACTTTGAGCTGAGCAATTTCTAGATCGCCG 250 37 100.0 35 ..................................... CTATGATCCTTCGGCAACATTACCTGCTGGTTGGG 178 37 100.0 34 ..................................... GATCAGGATGATGAGGGGGGCATCTTGGGGTGGA 107 37 100.0 35 ..................................... GGTTGGGAACTGCCAGGGGAGAGCTGAAAATCCAG 35 35 94.6 0 ...................................-- | ========== ====== ====== ====== ===================================== ============================================ ================== 10 37 99.5 36 GCGATGATCACTACCAAACCCTTTCAGGGATTGAAAC # Left flank : GATATCCCAGATGATAAACGTCGAACTAAGATTCACAAGATCCTCAAATCGTATGGGCAATGGATGCAGTACAGCCTATTTGAGTGCGACTTGAACAACACGCAGTATGCGAAACTACACGCTCGGCTCAGCCAACTGATTAAGCCAGAGCAGGACAGCATTCGCTTTTATTTCCTTTGTCGCTGCTGCCAAGCAAAGGTAGAGCGCATTGGTGGCGAACCCCTTCGAGATGAGGAAATATTCTTTGTGTAGTGCGCGGATGGGTAGGTGTTTTTCAGGCTTTTGTCTTTAAAGAGCTGAAACATACATCTAGAAGCAGTTTGGGCAATTTTTAACAAAACTTGCTCCGCGCAGGACCTGAAAAGCCCTGTGTGCTTGCAGTACAGTCGTCAACTGGAGCCGATGACCAAGCTAATGCATCACCTAAAATGCTATAATTCGAGCGATCCGCGCAGTCGAACCTTGAAAAGTGCATATGGTTACTTTTTCAGGCTTCCGCG # Right flank : A # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGATGATCACTACCAAACCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 14789-14100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXWX010000101.1 Phormidium tenue FACHB-886 contig101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 14788 35 100.0 38 ................................... GGTGATCGCAAAGCTGACAGGAATGAGATATACGACTG 14715 35 100.0 39 ................................... TAACCTCTTGATCTTCTGGAAACCTTTGGAGAAGTTCTT 14641 35 100.0 38 ................................... TTAGCGCCTCCATTAGGGACAGCGTTGATCGTGTCATC 14568 35 100.0 36 ................................... TTGCTAATAGCCCAATATGCCAATCCCACAGCAAAC 14497 35 97.1 36 .....................A............. TTCGTTCTTGCCGAGCTGCGTGCCGGGAATATTCAC 14426 35 100.0 39 ................................... CTTTCAGGTGTCTGTTGGTCTTGGTCGTTAGGACGCGGA 14352 35 100.0 38 ................................... GTCTCCTCCGTGTAGAAAAACGGGGGTAATAATGACTA 14279 35 94.3 39 ...........G...T................... AGCAATTCACTGTACTTATAGACGTCTACATCCGTTTTT 14205 35 97.1 36 ...............T................... CAAGAGACGGCAGATCCACAAGTTACGTTAGACATT 14134 35 82.9 0 .......G.C.CT..............G......G | ========== ====== ====== ====== =================================== ======================================= ================== 10 35 97.1 38 CTTTCACAATCAATTCCCCGCGAGGGGACTGAAAC # Left flank : CCTTTAGCCCAGATGAAAAAGCTGCACAGCCATGTAGTGCAGCGGGTGAAGCCTGATGAGGATAATGTGCGTTTCTACTGGATTGCGGCAGATTGCTTGCCGAAGACGTTGACGATCGGCAGCAATCCGCCGGAGCCGCCGCCTAAAGCTTATATTGTATAAGTTTGGCAGCGGCTGGGAAACGGATGAAGCGGATGAGGTAGATGATCGAAGGATCTATCTACCTTGTTCAATTTTTTGTAAAAAATATTTAATTTTTCTCTAATTGACGTTTCTTCGACAATCAGCATAATGGTGGAACGGGCTGTTCCTGTCCTATCTCTGTGGAACCTTGAAAACCGCATGACTTCGTTGACCTGTGTCGATGCCTGATTCAGTGGGCATTTCAGACGCTAAATAATCAAGATTTTGAAAGAGAAAAAGCATTTTTGAACTTCAAAAATGACCTGCGTCGATTTCCGCTCAGGAGCGCTTGCTTAGGGCGGGTTTCGGAAGGCAGT # Right flank : TATAGGAGTAAATGATAAAACTGATGGAACGGAGAGGTTAAGTGCAGATAGCCAAAACTCTACTCAAACCACCGCGATCGCCAATTCCCATCTGTTTCTATCTCTTGCCTATGCCGTCTCGTCCTCGCTCCAAACCCACCGCGCTCTGGGCAGCAGAAACCGCCCTCGTCGGCATCGAACTAGAACTCGTGCCCCTCAAACCCTGTACCCTCTACCCGGAATACGCGATTGGACTCCACGCCTGGCTTCTCAATCAAGTTCGGCAGAGTGATCCCGCCTTATCTGCCTACCTCCATGATGGACAATCCGAAAAGCCCTTCACCTTATCTCGACTAGAAGGATTGCCCCTCACCCAAAGCACCCTCACCGTCAAACTCGATCAGACCTACCGCTGGGTGATCACCGCCCTCTCCCAGCTGGTTGCTCAATGGCTAGTCCAATGGCTCTTCGCCCTTCCAGACCGTCTCGATCTGCGAGGTGCTCCCTTTCGGATTGTCCGC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCACAATCAATTCCCCGCGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 6445-5826 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXWX010000162.1 Phormidium tenue FACHB-886 contig162, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 6444 37 100.0 35 ..................................... GTTGAGTATCTGCCCAGTCTTGAAGAAATTGATAG 6372 37 100.0 38 ..................................... GTCTTGTATTGAATGGGTGTCAAGTCTCATACAAGACG 6297 37 100.0 35 ..................................... GAAAAACTGATAGAGCTGTACGGGTGCAGCGTTAG 6225 37 100.0 36 ..................................... TTCAAGGCTGCGAGCGCCCGCCGAAGGGTCGCGTTA 6152 37 100.0 36 ..................................... GACGGGAAATTTTAGAAGCAGTAGCGTTCAATGAAA 6079 37 94.6 35 .................CC.................. CAACTGGGACGCGATCGGAACTGCTCTATTCTCAC 6007 37 91.9 36 ..........C......CC.................. ACCAAGCGCTGATCGACGGGCGCAACTGGGAAGATC 5934 37 94.6 35 .................CC.................. GCTAGCTCACGGGCGAAGATCGCAGGATCTAACCA 5862 37 91.9 0 ................CCC.................. | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 97.0 36 GTTTCAACTCTCTAAATTTCGGCAACGGGACTGAAAC # Left flank : TGGAAGCCTCATACCAAATACTACTCTTAGAGCAAACGCAAGTGAGCATCTGTCCCCGGAATGAGGCATATTGGGTGGAGGAGAGTGTTTAGCTCTCCCCTCCCACACCACCCTGCATGCGCAATGCCACTTGGTTTTTGAATTAGGACTGCAAATAGGCCGCTACCATGGAGCTCTCAGCCCAATATTTGAAAGCTTTGGTTGAGGCAGTAATGGAGGTTCTGCCGCAAGAATTTTTAATGACGAACGATCAGTATCATTCACATTGCTTTAAGCAGCAATTTCAAAGTTAGAGTAGCAGTCTCAATTTTGGCAAACCAAAGTGGGGTCAAAATTCCTAGAAGGTTCGCCAAATCTCTAGAACCTGGACAAGTCAATACGTTATAACTTTCTTTCGGGCAGGTGAGAGTCAGTTGCGATTGATTTTGGCAAAGGTTTTTTCGACCTTTGCCAAAATCACTCTCGAAATTCGCTACTGGAGCCGTGTTCGGAAGGCGGGG # Right flank : AAAATGAACGATCGCCTAACACCTTCCACCGCAGATATTCACTACGCTATGGGGCCTCCAGCAGCGGAAACACCAAATAAAGGTATGAACGCCGCGATCGTCGTCTGTATACGGCGTTTATGTGACCCCTCAACCAGAATGTATCGCTTACCCTTCTGATTCAGTACCAGTACCTCAACAAACTACTGATACATCGCTAGCCGAATTCACCTCTCCTAATGCCATCCTGCACAGAGGCAAAATCTGGAGCCATCAGCAAATACAAATCATAGTCATGCCGGTCAGTAACCTGTTCAACCGCTGGAGCATGTTTCCCGGTACTGTTGATACCAAAACATAAGTTGCCAACGGATCAGTATCACATACGGGCAGCCGATTTATCTGCATTGCCAAATCATCTTCTCAAGTTGCCTGTCCCTTCGCAATTTGCATAAACTTGATTGGGCTGAGGTATACGTCTGTTGATGTACTGTAGTGCTACGGTACAAAATAAATGCTCC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTCTCTAAATTTCGGCAACGGGACTGAAAC # Alternate repeat : GTTTCAACTCTCTAAATCCCGGCAACGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 79417-79090 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXWX010000016.1 Phormidium tenue FACHB-886 contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 79416 37 100.0 35 ..................................... CATCTACATATCAGTTGATTGTAAGCCAGACCGAA 79344 37 100.0 35 ..................................... ATGGTCGATTGCGATGACATGAACTTCATCGCAGA 79272 37 100.0 37 ..................................... GTGTGGCAGCCTCGTTAGCGGATAAGTCTCTTGTAGC 79198 37 100.0 35 ..................................... TAGCAAGCAGCACATATTCAGATTGTGTCAGGGAA 79126 37 75.7 0 ...A.A........C..AA.CA..A.T.......... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 95.1 36 GTTGCGATCGGCTTTTCTGTAGTGGGCGGATTGAAAG # Left flank : AGCCGATTACAGGAAGTCCTCAGGAGAAGGCTAGGAACTTAGTGATCGCAGCCTATCAAGCCCGAAGATAAAAATACTTGCGTTTAGTTCAAGGGTACTGTATAAATTAATTGCGCCGTAGTTCATGCCAGCAATGGTCTCTGTGCTAGCGATAAAGTGCGAGCTAGTTTGGCTATCGGAAGGTAGTCTTGCTTTCTGGCTCTGGTTAACTATCCACCTCGAAGCTGGGTGCGCTCCCATGCAAAAAGGTGCGGGTCTACCGCAGTGCTGGTTAACTGTTATCACCTCCGAGCAAGGAGGAATCCACCCTAACTCTATAAATTTGGCAAACCGAAGCGAGGGCAAATTTCCTGGTAGGTTTGACAGCCCTTACCTAATCACGTTTTAGGAACTTTCCACAAGATGGAGCAGTTTCCATTAACTGTTGAAAAAAGCCTCAAAACGAGGTTTGCCAAAATTAGGTCTAGAAGACTTAATACAGCTATTGTCTCAGGCTTGCT # Right flank : CAATAAACGATCAGGTGATGCCATGATTGTCTGTCTGCAAGTAGATTGAAAGCTACCAACTCATACGGTTTTGACGTTCTGTAAATTTTGACAAGTAAGTCTAAAATTTTCGGCGATTGTGGCCATCCCTAGCAAAGCTACTGACATGTAGCAATCTCAGAGAGTTGCGGTAAGCTTAAAAATAAGGTGGATTGAAAGGCGCACTTCCTTCACACTTATGCTAGTTGAACGACAACTAATTTGTTAACGACCAGAAAAGGGTCACCCAACGACATGAATGTGTTATGAAGACAGGAAAATGTTAACAACGACAAGAACTTGTTAACGACGACAGATAAAGCGTTATTCGACATGAGGGATATGGGCGATACTGGATTCGAACCAGTGACCCCTTCCGTGTGAAGGAAGTGCGCTACCACTGTGCTAATCGCCCTTAATGATAGATGTTTGCTGCCTCTAGTCGAGCCTGATGCAAGACTTTTACAAGTTTAACAGATTCT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCGGCTTTTCTGTAGTGGGCGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //