Array 1 15579-17647 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSGJ01000049.1 Vibrio cholerae strain N2749 NODE_127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15579 28 100.0 32 ............................ TTGGTAGTAAGCCAGCGCCAAAGCACCGGCTG 15639 28 100.0 32 ............................ CCTCATTTATTCATAGCTGCTTTTACACGCTT 15699 28 100.0 32 ............................ CTTATTCTCAAGTTTTGTTTGAACGAATTAAA 15759 28 100.0 32 ............................ ATTAAATGTGCAGATCTGCACAAAATTCCTTT 15819 28 100.0 32 ............................ TTTTGATAGGCTTCTGTGTTGTCTAACCCTAG 15879 28 100.0 32 ............................ TTATAAACATAGTAATCCCGGCTTATCTCGTA 15939 28 100.0 32 ............................ TCATCAAAACTACGTTGAATCAATCGATTCTC 15999 28 100.0 32 ............................ GTTAGGCAGTCCAAAAGTTAAGGAACTGCCAA 16059 28 100.0 32 ............................ ATATTCTTCTTCACCGCAATGAGGACAATACA 16119 28 100.0 32 ............................ CAAATCCCAATGATCGTCAAAGATCTTTAGAT 16179 28 100.0 32 ............................ TTGAGTTAAATTTAAAACGGATTTTAGATTGT 16239 28 100.0 32 ............................ TATTATCTTTTAAAGAAAATGGGATTCGGTTT 16299 28 100.0 32 ............................ TGTCGTTATCTTCGATCCCATTTACCGCTTAC 16359 28 100.0 32 ............................ ACTATTTTGATTGCTTACGTTCCAAGTGTTTT 16419 28 100.0 32 ............................ TGAATGAAGTAAAGGCGTGTATGTCATCTGGA 16479 28 100.0 32 ............................ TTGCTTGATGGTGAAGTAACCGCGATCGATAA 16539 28 100.0 32 ............................ TTTCTGCCAGATTGGATAGCAGGGATAATATG 16599 28 100.0 32 ............................ TTACACCGTACATACGCGAATTAATTTTAGAA 16659 28 100.0 32 ............................ TCAGTCATTACCTGAGGCACTACAACTGGCCG 16719 28 100.0 32 ............................ AAGCCAATCGATTTGGCAAACTGACCCAACAA 16779 28 100.0 32 ............................ TAAAAATAGAGCAGCAAAAATAAACCAAACAA 16839 28 100.0 32 ............................ TTTCACAAAAAGCAAAGCAATATGGAAATCAA 16899 28 100.0 32 ............................ ACAAGGGTATCTATTGCCGAGATCGCAAAGTG 16959 28 100.0 32 ............................ TATTAACTTTATGAGTCAATGGGGATAATCTG 17019 28 100.0 32 ............................ TGAAAGTAATCGTCTAATCGGCTATTTAACAT 17079 28 100.0 32 ............................ ATTTAGCCTAGCCGCCGCCTCTGCGGGTGCTT 17139 28 100.0 32 ............................ ACAACAGCAAGGCTTATCCACCCGAGAAGCAT 17199 28 100.0 32 ............................ TCAAGCAAATCTCGATAAGCTTGATCGCTGAG 17259 28 100.0 33 ............................ ATAATACACCACACAAGAGAAACGCCCCTTAAT 17320 28 96.4 32 ...........T................ GAAACTTTCGTTATTAGTGATGGTGAAGGCAC 17380 28 96.4 32 ...........T................ ATGACGCAGCTATCGATATTAGTCAAGGTAAC 17440 28 96.4 32 ...........T................ ATCACTTTCGGGTTCCGTTTGTTCACCTTCGG 17500 28 96.4 32 ...........T................ AAACGATGAGATCTGTAAAAATGGGGTTTTGA 17560 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 17620 28 89.3 0 ..........AT.............T.. | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTGCTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : GGGCGGGATCGAACTTTAACCACTGAAAATAAAAGACTTTATTTTATTGGGAACTTTTCAAGGTAATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //