Array 1 163-1961 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADIVZ010000022.1 Nocardioides acrostichi strain CBS4Y-1 Scaffold22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 163 28 100.0 33 ............................ GGTGGCGACGGCCAGGGAGAGGTAGAGCGGGGC 224 28 100.0 33 ............................ GGCCAGGAACCCGATGACCAGCAGCACCGCGAC 285 28 100.0 33 ............................ GTTGATCTTGTTGTCGACCAGCGCGGTCAGCAT 346 28 100.0 33 ............................ CGCCACCGGCGTCCGCACCGACCAGACTGCCGG 407 28 100.0 33 ............................ CACCAGCCTGCGCAGCGAGAACCCCTTCGCGAA 468 28 100.0 34 ............................ CGTCGCGATACCCAGCCCTGTGAGCGCACGGCTC 530 28 100.0 33 ............................ GTTCGCCTACACGGTCGACGTGAACGACCAGGG 591 28 100.0 33 ............................ GGCGTCACCGGCCACCCAGCGCAGCGAGGGATG 652 28 100.0 33 ............................ CGAACGGAGAGGTTCGTCGGGTGCCTCACGGGT 713 28 100.0 33 ............................ CTGGAGGTCGACCGACGCACCCTCGGGGAGGTC 774 28 100.0 33 ............................ CTCGCCGACGATGGCGGGGTCGTCGTCGAGGAA 835 28 100.0 34 ............................ GGTCGGCATGACGACGGGCGAGGTGCCCCACCGG 897 28 100.0 33 ............................ GTCTCTCCAGGGCCTGACCGGCGACCTCGAGAA 958 28 100.0 33 ............................ CCGGTGGTGGCCCAGCTCGTGAGCCAGGGTCGA 1019 28 100.0 32 ............................ TCGTCGAGACGGTCCCGAGTCACTGATCCGTC 1079 28 100.0 33 ............................ CCCGCTGGAGACCAAGCGGCCCCACCGCTACGA 1140 28 100.0 33 ............................ GTGGACGCGGGGGCGGACGCCGCGGGCGCCGGA 1201 28 96.4 33 ............G............... CGGCGTCAGGTCGGGGTGCGGGTTGGCCAACAG 1262 28 100.0 34 ............................ CGGGTCGTAGTCGACAACGCGGTGGGTCTCGTCG 1324 28 100.0 33 ............................ GACCCGCGGTTCCACCATCAGGACACGACCTTG 1385 28 100.0 33 ............................ CAAGAACCGCCCCAAGGTCCAGAGGGGTCTCAA 1446 28 100.0 33 ............................ GATGTCGATGACGGCCGGCTGGGCGTCGTCGAG 1507 28 100.0 33 ............................ CCAGGCCTTGCGGGTGCCTGCGTTGCCGACCGG 1568 28 100.0 33 ............................ CCAGGGTGCGGCCCAGGACTGGCGGCAACATGC 1629 28 100.0 33 ............................ CCCTTGGGCCGGCACAGCACCGCACGGTTGATG 1690 28 100.0 33 ............................ CATCACCGAGACCCCCGGCTTCACCCGGATCGA 1751 28 100.0 33 ............................ CGGCGAGGCCGGCTACATGTCGCCGTCCTGAGC 1812 28 100.0 33 ............................ GTCGAGGAGCTCGGCGTTACCCGAGACGTTGGC 1873 28 100.0 33 ............................ CATCTCAGGCAAGGCCGAGGTCATCTGGTCAAC 1934 28 85.7 0 .......................A.AAT | ========== ====== ====== ====== ============================ ================================== ================== 30 28 99.4 33 GTGCTCCCCGCTCTCGCGGGGATGAGCC # Left flank : GCGGAACACCGTCCGCCACCAGCCGCCGGATCAGAGCCCAATCCTCCACAGAGATCACCCATCCAATCTGTCTGGGTGGCCTCGTTTTCGACCGTCGCTATGGCCTCGTTTTCAAGCGTCGTCGACACCCCAGCGGATGGAACTGCTGGCGGCTCACGAGGCG # Right flank : TCCCGGACGTAGTCACGCGCGAGTGGTGCATCGTTTGGCGAGATGGGGTGTCGTGGACCCACGCCGAGCCAGCCAGGGCCATCGACCGGCTCTCGGCTCCTGCCGATTGCTCTAATCCGAGAGGGGTTTTCAACGTATTTCAACTTCCCAGTGCGTTCAGCTCAGGGAAGTGATTCCCTCCACTACCGATATTGATAACGGTTGGGTCACGGTCTTCGGCGGGGCTGTGGAATGGGCGGTCTTCGGGGGCTGATTGTCGGTGGTGACGGCTTGACTAGCCCACATGAGTTCTCTGGTGGCCGAGCCACTCGATCACCCGATCGGTCGGGTAGTCGAGCAACTCGACGCTGCCCTGGACGACGCCGAGGGCTTGTCGCTGCTGGGGCTGGACCAGGCCACGACGGCGGGGGCGTTGAGCGTGTTGACGGCATTGGAGTCACGCCTGGTCGAGCTCGAGCACCGGGTGCTGGCGCACGCGGGCGAGGTCGTCGTGGCGGACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCTCTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 164904-167494 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADIVZ010000008.1 Nocardioides acrostichi strain CBS4Y-1 Scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 164904 28 100.0 34 ............................ CTGTGCCGACCCGTCCTGCGCGGAGGCCGGCGAC 164966 28 100.0 33 ............................ CCCCGACCTGGCGGGCGGGTTCGCCATCCTCAT 165027 28 100.0 33 ............................ CTACCTGCACGGGCGCTCCAAGCTGGACCAGCG 165088 28 100.0 33 ............................ CTCGGCGGATGCCGACGTGGTCGCCGCTGGTGT 165149 28 100.0 33 ............................ CTGTATACCGCACTTAGCGTCTGACGCAACACC 165210 28 100.0 33 ............................ CGGTCGGTGGCCCACGGCTTCGGTCGGAGCTGG 165271 28 100.0 33 ............................ GTCCGTTCTCAATGGCCGACAGGGCACCGCGCG 165332 28 100.0 33 ............................ CTCGCCGGATGCCTTGTCGTGGACGATCAGCGC 165393 28 100.0 33 ............................ GCCGTCACAGCTCGCGTCGTCCCTGCCGTTGAC 165454 28 100.0 33 ............................ CGCCTCGGCCAGGGCGGAGCCGATCTGAAACGC 165515 28 100.0 33 ............................ GGAGGCGACCGCAACCGTGGCGGCGCCCGCAGC 165576 28 100.0 33 ............................ CCCGAACCCCTCGGCCTCGATGCGGGCCTCGAT 165637 28 100.0 33 ............................ GTTTCGCTCGTCGTTGTCGCCCCAGAAGAACAG 165698 28 100.0 33 ............................ GGCGTCGTAGTCGCGGGGGTCGCCGGAGTAGAC 165759 28 100.0 33 ............................ CTCGAACTCCGCCATGCTGGTCGGGCTGTACCA 165820 28 100.0 33 ............................ CATGTCGACCAACACGGTGCAGCGGTGGGGCCA 165881 28 100.0 33 ............................ TGTGACCGTTTGCCATAAGCCAATCCTTAGGCT 165942 28 100.0 33 ............................ CGGCTGGTCGAAGGCGCCGGTGAGGTCGGCGAA 166003 28 100.0 33 ............................ CCCACGCTACGAGGCATCCGACTCGCCGCCCGT 166064 28 100.0 33 ............................ TAGGTGTGAGTACCCTGTCAGTCGTCGTGCTAG 166125 28 96.4 33 ......T..................... CGCAGCTGGCCTGCGCACAGTCGCCTCGTGCTG 166186 28 100.0 33 ............................ GGCACCCGCCCCGCCTACGCCGTTCGGCGGCAT 166247 28 100.0 33 ............................ GTACCGGGGGCCGCTCATCGCGGGGACGCGCTT 166308 28 100.0 33 ............................ CCCAGTGGCTCGCCTTCAAGAGTCGCGACGTCA 166369 28 100.0 33 ............................ GGCCAGGCGCCAGTTGTTGAGGGCCTGCTTGAT 166430 28 100.0 33 ............................ GAGCCCGTGACCGAAGGCGACGACAACGAGGGA 166491 28 100.0 33 ............................ CTGGTCGCTGCCATCGCCGCCGGCCCACGTCCG 166552 28 100.0 32 ............................ CCGGCGCCGGGAGTCCGGGTGAAGATAGGTAG 166612 28 100.0 33 ............................ CGGCTCGCCCTTGGCGGGGAGGCGGTCTTGGGG 166673 28 100.0 33 ............................ TCAGGGAGCCCGAGGACGCGCCGGCCAGCCAGG 166734 28 100.0 33 ............................ CCGCTTGACGTGCACGGTGACGCCGTTGCGGAA 166795 28 100.0 33 ............................ GATGGTGACCTCGGTCGGCCGGTTGTCGAGGTC 166856 28 100.0 33 ............................ CTGGCACGCGATCGGGATCGAGGCCGAGCACGA 166917 28 100.0 33 ............................ GTGCCATCTGCCTGATTCCCTTCCGTTACTTGC 166978 28 100.0 34 ............................ CCCCCCACCCGGCCGCCACCGTCGTGACCCGGGC 167040 28 100.0 33 ............................ CTACCCGTTCAACCCCGGATGGTGGGACTCCAA 167101 28 100.0 33 ............................ CAGGCCGAGGCGGTACAGCAGCCGGGTGTTGAT 167162 28 100.0 33 ............................ CCCTGCCTCCAATGGGAACACGGGCGGCACGAC 167223 28 100.0 33 ............................ CCGCCCTCATGGCCGATCGCCTTTAGCAGCGTG 167284 28 100.0 33 ............................ GTCGAAGCTCACGCCCACTAGGTCGTAGGAGCC 167345 28 100.0 33 ............................ CACGACCACGCAGATGCTCGCCCGCTTCGACAC 167406 28 100.0 33 ............................ GCCGCGGTGTCTATCGTGATCCCTATGCGCGGC 167467 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 43 28 99.9 33 GTGCTCCCCGCTCTCGCGGGGATGAGCC # Left flank : TGACACGGAAGGTGCGGACTGGAACGTCGTGCACCTCTGGGACGGTGGCAACCGCACCGTGGATGCGGGCACGAACTATCACGTGGACGTCCCGTGGTAGTCCTCGTGCTGACGGCGTGCCCGGCCGGCTTACGCGGCCACCTCACACGGTGGTTGCTCGAAGTCAGCCCCGGAGTCTTCATCGGCGAGATCACCGCTCGCGTGCGTGAACGGATGTGGTTGCGCGTCCTCGAACTTGCGAAGGACGGACGAGCGATCATGGTCTATTCGGCGGATTCCGAACAGGGCTTGTCGTACCGCGTCCATCGGCACGATTGGGAGCCCGTCGACTTCGATGGCGTATGGCTGATGCGACGCCCCGAGGAGGTGGATGCGACGCCCGCAATGCGACCCGGCTGGAGCAGCGTGGGACGGATGAGAAGGGCCCGCCGTGGGCGCTGACTGCACCGAAGTTCATGCAGGACTGCTTGTTGAGGTCATATCGTTGCAGGTCAGCAAGT # Right flank : CCATGTCGGCAACGCTCGAAAATGAGGCCGATCCGACGCTCGAAAACGAGGCCACCGGTTCGTGTTGTCTAGTCTGCCGGGTCTTGGGTCTTGATGCTTGGCAGGGTGTCGATTCCGCGGTTGCGTAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCTCTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //