Array 1 896714-897174 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074592.1 Salmonella bongori serovar 40:z35:- strain CFSAN001045 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 896714 29 100.0 32 ............................. GCATTGCCGGGATAAATATTAAATCCGGCGTT 896775 29 100.0 32 ............................. GCGAAACAAAAACAGCACGCGTACAAGGTGCA 896836 29 100.0 32 ............................. GAAAAAATACAGATTAACTTGCCTTGGAATAT 896897 29 100.0 37 ............................. CTATCTCTTTGGGGGATCACAAACGACGGCATGTGTT 896963 29 96.6 32 C............................ GGGCGACCTCCGTTAGATGTAGTGATGAATCA 897024 29 100.0 32 ............................. AATAAATGTTTCAGGCGGAAATAAAGCCGGGA 897085 29 96.6 32 ............T................ TTTCCTAACATGCTCTCCATTACTGACCGCCA 897146 29 93.1 0 ............T.............T.. | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 98.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCACTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCCATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGACTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTATCTATCATCTTGCGTTCGCTATTTCTCCAAAAAATTCGAGGAATGTATAAAGTAGCTGAATAATTTTCCATAGCGAGACATGGATCACACTATTTTGGTGAGTTTAAAGAAAAAATCGTTCACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATGTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : GTTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTGAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACCTCGATATTATTCGATACCGGACCTGACGACAGTTTTATACAAAATGCATCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCACATGGACATTATGATCACTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATAACGCTTCCTGGTATGACCCGCAAAATAAAAAAATTATCGCGAGAAGGGGACTATTCACGTTACCGAATGGTGTACGCGCGCGACCCTATGCCAATTAGCGACAAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 905541-905814 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074592.1 Salmonella bongori serovar 40:z35:- strain CFSAN001045 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 905541 29 100.0 32 ............................. GCAATCTTACAGTCATGGGTGATATGACATTA 905602 29 100.0 32 ............................. TGGTCATTTTTAGGTGACGGGATTGTGCGCTT 905663 29 100.0 32 ............................. CGGCTGCTGAAAAAATCGCAGCCCTGAAAAAA 905724 29 100.0 32 ............................. CAAAAATCATCAGCGTGGAGGGTGGCCGGGGT 905785 29 82.8 0 ............T........C.TT..T. | T [905810] ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCTGTCACAACAGGTCATCATGGACGCCCTCCAGATGCAATTCCGGAAGTGGATCATTTTCGTCAGCAGGATAAAGATGCGGCAAGAGAGTTCCTTCTTAAAATAAAAGCGCTTTTCCCCTTAATTACCCTTCCTGAAGCCTGGGATGAAGATGAAGGTATTGCCCAATTTCAACAACTTTCCTGGTTTATTTCCGCTACGGTGGTATTGGCGGACTGGACAGGATCTGCCAGCCATTATTTTCCGCGGATGGCGAAAAAAATGCCGGTCGAGATGTACTGGCAACAGGCGCTCATTAAAGCGCGGAAGGCCATTACGCTTTTTCCCACTGCGGCGAATGTATCTGCCTTTACGGGTATAGAAACGCTTTTTCCTTTTATTCAGCATCCCACGCCGCTACAACAAAAAGCGCTAACGCTGGATATTCACGTGGATGGTGCCCAGCTCTTTATTCTGGAGGATGTCACCGGGGCCGGAAAAACAGAGGCGGCGCTTATCC # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATGCTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGCTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCGGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACGTTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTCTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCCTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //