Array 1 14733-15429 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFBX01000680.1 Nitrospirillum amazonense Y2 contig00901, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 14733 32 100.0 34 ................................ AGCACCGCCATGCGCCGTCGCTTTGGCGAAGAAG 14799 32 100.0 34 ................................ AGGTCGAGCACCGTGCCACCACCCAACCTGGCGC 14865 32 100.0 35 ................................ TGATAAGTTAGGCTGAATTCGCCCGTCAGGTAGTT 14932 32 100.0 35 ................................ CTGCTTCCCGGTATCCGCAAGATCAAGGGCGACTA 14999 32 100.0 35 ................................ GACATCACGCCGCTGCGGACCACGACCAACAACGC 15066 32 100.0 34 ................................ ATCGACAACGCCCCACCCATGGCCGTGCGCCAGA 15132 32 100.0 34 ................................ GACCAAGCAGGTCGGCGGCGAGGAAGGCATCAAG 15198 32 100.0 34 ................................ GCCTACGAGTGCGCGGGAATGACCTTGACACCAG 15264 32 96.9 35 ......................A......... GCCGTCACCGTCAGGTTGGACCCGCCGCCCTTGGC 15331 32 96.9 35 ...........C.................... ACGAGCTGGTCGGGAAAGATGTGCTGCTTGACCGC 15398 32 93.8 0 .............................T.G | ========== ====== ====== ====== ================================ =================================== ================== 11 32 98.9 35 GCCGCCCTCCGTGCGAGGGCGCGGATTGAAAC # Left flank : ACCCTATGCTGATGCTGATCACCTACGACGTGAACACCGAGGATACCGCCGGCCGGCGCCGCTTGCGCCGTGTGGCGCGGGCCTGTCAAGATCATGGGCAGCGTGTACAATTCTCCGTCTTTGAATGCGAGGTTGACCCCGGGCAATGGGTGGCCCTGCGCGCCCGGCTGGTCGCGGAAATCGATCCTGCGACGGATAGCCTGCGTTTTTACCACCTGGGCGCCAACGCCCAGCGGCGTATTGAGCACATCGGTGCCAAACCAGCCCAGGATCTGGGCGGTGCCTTGATCTTCTGACGCGCCCACGCCGGGCGGCCGAGATCGCGCGAACCGGAAGCACACACCTATTTCCTGGGAGGTTCGCGCACCGAATTTTCCAGCCGTTGTCAGAGCCTTACGGTAAAATGGTTCGCTGGCTCGTGAGTGGCGATGCCCGACAAGGCAAGGGTTCGCGTAAACCAAGTGGTTTTATGTTCTTGGACAAGTGCATAGACTGACACA # Right flank : GCAGTACTGGCCCGATTACGGCTGGATTGGGCGGCGGAGTTGAAATGGCCCCGCCGCCCGGTTCGTCATTGCTTAGAGGGTCACAAGGACGGCTCCCCTCACTGCATCGTCCCCACCGGCACCGCCACGGCGACGGCGGCCCCCCTTTCGGTTTCATCCAGCGCCAGCAGCGGCCCGACCAAGTCACCCAGCCGCATGGGCCGTCGGGCGGTGCGGGCTCGACGCCGGGCGGCCCTCACCCACATCATGATGTGCGCCCCGGTGGCCCCCGCCTGGGCGGCGATGGCGGCCGCCTGGTAGAGGTCGGTGTCCTTCAGGTCCGTCCCCAGGTGGAACCGCAGAATGCGGATCAACGCCGCGATATCGGGCAGTGAGATGGTGACCACACGTTCCATCCGGCCGGGCCGCAGCAGGGCGGGTTCCACCGCCTCGGGCAGGTTGGTGGCGCCGACTACCACCACACCCTTCCTGGAGGCCATGCCATCCAGGTGCTGCAACAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCCCTCCGTGCGAGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.50,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : NA // Array 1 34927-34592 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFBX01000188.1 Nitrospirillum amazonense Y2 contig00228, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34926 29 100.0 32 ............................. GTCCACGCCATCCTGTGCCGGCTTGAGGAACG 34865 29 100.0 32 ............................. GCCAGCAAGACTGGCGACCCTGCGGCCATCGT 34804 29 93.1 32 ....C.......A................ CGCCAGGAGTGGGAACGCCTGGAGGAAGCGAC 34743 29 96.6 32 ....C........................ GTGTCGGACGAGGAGGTGGAACTGCCGGAATA 34682 29 93.1 31 ....C.........T.............. TACCAGTTGGCCAGCAGCACGGTGACGGGCG 34622 29 89.7 0 C...C.......................T | G,C [34596,34612] ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GGTTTCCCCGCAGGCGCGGGGATACACCC # Left flank : TCTTGCAGGCCC # Right flank : ATGGCAGCTGCTAAATGACAGCGACTGCACAATGTGGCCTGCGCACCTGCTTGGCCCCTCAATTCCGTTGCCTCCACTGTAAGGCGTGGCGAAGGCCTTGCCACCTGGACATGGGCATGCCGCCGGGGGGGGCCAGCCGAAGTGGAGCCCGTGGACAACGCCAACCCGACGAGCCATAGCCTTTTCACTGTAGGCTACCTCCAACCACCATCGCCAAGCGCCCAGGCCCCCGCCACAGCCGTCAGGTACCCGTCACAAACTTCCAGCCGTCGCTGTACTTGGAGAGGATCGCGGTGCCGTCGGCCGGCTCCTTCATGCCATCGATGTCGAGGCCGGCTTTGGCCCAGGAGGGGGCGTCGGTGATCTGGTAGCGGTATTCGACATTCGCCCCTGCGTCCTGCTCCTGGTAACGGACGATCGCCACGACCTGCTTGTGGCCGTAGCAGAATCCGCCCTTCCCCCAGACGCCGGCGGCCTTGCCCTTGTCCGTCAGGTCGACC # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCCCCGCAGGCGCGGGGATACACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 405-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFBX01001005.1 Nitrospirillum amazonense Y2 contig01566, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 404 29 96.6 32 A............................ CCAGCGCCATGGAAATACTCAGCCGAGTAGGC 343 29 100.0 32 ............................. GACAGATTGTTCTGGCTGTTATCGACGTAGCT 282 29 100.0 32 ............................. GTGTTTGGCAGAAGGGCAACACGGGCCTATAC 221 29 100.0 32 ............................. CAACACGGTCATTACCCAGCTGATCGTTGATG 160 29 100.0 33 ............................. GCCGACGCTTGTTCCTCGTTCAGGCTATCCAGG 98 29 93.1 32 .T.C......................... AGTCCGCCACCTGTCCGGCGCGACCTCGCGCA 37 29 96.6 0 ....T........................ | ========== ====== ====== ====== ============================= ================================= ================== 7 29 98.0 32 GGTTCCCCCGCAGGCGCGGGGATACACCC # Left flank : CGGCGACGTCAGCGCTGTGGTGGGCGAGATGGTGGCTGGTAAGGCTCTCGTCGTCATACTTTCCCCAGGCGTTGCCGCGGATCACCATCAGCTCCTGCAGTCCAGTATTCAGGATGCTTATAGAGTATGTGCAATCATGCGGTTTCTCCATCTTAAATAGCCGTCTATATGAACGGCAACTGAGGTGCGAAGACGGCTTATGGCCTGGAATGGGCGGGAAATGTGGCCAAGCGGAACGGGCTTCCACTCCGACAGCCTACCTGGGCGGCATGCACACACCCGCCTCTCTCGGGCCACCGCCAGTTCCATGTTAACGCTCATCCGCTAGCGGCTTTCGCTCAGACTTTTGGTCGGTGCGATGTCGGGCGGAGGCCGGAAGAAATTTGCCTTCATTCATGGAAGCACCGGTATAATTAGGTGCTTGCAACAGGGCTCATGGGCGGGGCTACGCGAGCGCAGAATCTTTGACAAGTGAAGTCATTCAGCCATTTAAGGGCCAG # Right flank : CTACTACAA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCAGGCGCGGGGATACACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 9683-9895 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFBX01001005.1 Nitrospirillum amazonense Y2 contig01566, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 9683 30 100.0 31 .............................. GTTATTGATGACTGTCTTACCGGCACCAGAA 9744 30 100.0 31 .............................. CAGCGCTACTGGACCGCCGGCACCTTGGCGC 9805 30 100.0 31 .............................. CCTGCGCTTTGGTCGCCCCGCACTGGCACCC 9866 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== =============================== ================== 4 30 99.2 31 GGTGCCCCCGCACCTGCGGGGATAGACCCC # Left flank : AAGCGCAATCCGGTGGCGTATCCATTGACCGCATAGTCCGCCGGCGAGCTGCGCGACTTTTCCGGCAAAAAGCCGTGATCCCATCAATGATCGACCACATGAAAATTCTTCTCAGGCTGGATGGGACTGCGGAGGAGGCGAAATAATGCCTATGGCCGTGGTCGTCACTCGTGACGTGGAAGATCGGTATCGGGGATTCCTCGGATCGGTGATGCTTGAACTGGCGCCAGGTGTTTACGCCCATCCACGGATGAGCATGGCGGTTCGCGGACGTGTCTGGGCGGTGCTCTCTGACTGGTATTCCTCACTGAGGAGGGGCAGCATCGTCATGACGTGGGCGGAAACCTCCGCCGATGGCGGTCTTGGCTTAACCTCGCTTGGGGAGCCGCCTAAAGACTTAGTTGCCCACAACGCCATGCTGTTGGTTCGCCGGCCGCTACGGTCTCCTTGACAGCTTAATTCTTGGACATTGTAAATATAACAACGCCTTACTGGGCAGA # Right flank : TGATTTCCATGCGCCCCAGAGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGCCCCCGCACCTGCGGGGATAGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 9361-8908 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFBX01000930.1 Nitrospirillum amazonense Y2 contig01437, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9360 29 100.0 32 ............................. CCTTCATGCGCCGCAATGACCAGTGCACCCCC 9299 29 100.0 31 ............................. GACATCGCGCGGCGCAAGGATTTGTGGTGTC 9239 29 100.0 32 ............................. ACGGCCGGCTATCGCGCCTTTGTGGCAAAGAT 9178 28 89.7 32 ......T............A.-....... AGCCGAGAAGCTCAGCCAGGGTTTCCTGACTC 9118 29 96.6 32 ..................A.......... GGCATCGGCGAAATCGAACGGATTGCGCGGAC 9057 29 96.6 32 ...........................T. ATGCCTGACACCGCCATAGCGCTATTACCCGC 8996 29 82.8 32 ...CT....A..T...T............ TTGGTGACGATGCTCTTCATCACGTCTTTGAA 8935 28 72.4 0 .........-....CC..C..G.TCC... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 92.3 32 GGTGCCCCCGCACCTGCGGGGATAGACCC # Left flank : GCAGACGCCGACCGTATCCGCAGTCTG # Right flank : GGTGGCCGCACAGGCACCTCCCGTCCCCTCCGCTCCGCGCATCGCCGGGGGCGCTGCGCTCCGGGGACGGGGCCCTCCTATGCGCTACCGGGACAACCCGATTGCCAGCTCATCACTGGGGTCCCCTATTGGGCGCCGATACCGGGTCCCGTTACGCCGCCGATTGGCACCGAAATTCACCCGGCAAATATTAGTGCGGTTGCTGGCAGGAGAAAAACCCGGACTCTTTCAACACCGTGAAATCAAACCGCGGCCCGGGTAAAGACCGTAGCGGGAATGTCGAGATGCCCATGGCTGGGTCCCTGGTGGTGTACGGGAGTGACGCCCGCGTGACCAGCCTGCCTTCGCACCGGACCTAACCTTTAGGACTAACTGTTTCGATTGTAAACTATCGCTCATAAAGGGTATTTCTGGCCGCGGCATATATCGGCGGTCGGCATTGCCCTGTGGTCCTGGGCTTGGCGGCCTCCATCCGGGAGAGCGAATTTGACCGAGCCCGA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGCCCCCGCACCTGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //