Array 1 914057-914884 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFL01000002.1 Streptococcus dysgalactiae subsp. equisimilis strain NCTC8543, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 914057 36 100.0 30 .................................... ACTACCTGTTGCGATATGAAGCTCTTGCAG 914123 36 100.0 30 .................................... TATAAATATCCTGATGTACCAAAGGATATT 914189 36 100.0 30 .................................... CAAACAAACTGGAGCAATTAGTGCTTTTTC 914255 36 100.0 30 .................................... CAAGAGATACAAAGCGCAGGCAAACAAGCT 914321 36 100.0 30 .................................... AAATATACCTAATAGAGACTAGAAGACATG 914387 36 100.0 30 .................................... TAGTCGAGATATGACATTAAAACGATTGAG 914453 36 100.0 30 .................................... GTTTAAATTAACCAATTTATCTCGTTCTAG 914519 36 100.0 30 .................................... TTTGGTCAGAGGTAAGGTCTTCAAATTTTA 914585 36 100.0 30 .................................... TCAATTTATTGATGCTGATGAAGACACAAA 914651 36 100.0 30 .................................... ACTACTCGTCATTAAAGGGTATCGCTTATG 914717 36 100.0 30 .................................... CAGACCTAAAACCATCGTCAAAACATTTAA 914783 36 100.0 30 .................................... TTGCTCTTATCTTTTATCCGTTTTTAGATA 914849 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCTGAAGTGAAATCGATGATTGAAAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGTGGAGCTTTTCTAACAAAAGATGAAGTGGCTAATTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAAGCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CAATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1567410-1565124 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFL01000002.1 Streptococcus dysgalactiae subsp. equisimilis strain NCTC8543, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1567409 32 100.0 34 ................................ AGACTATAAAGTTATTGGTGGTAAAGGAAAACTT 1567343 32 100.0 34 ................................ AAAAACACGGCAAGAACGCACTTCTGGGAATATG 1567277 32 100.0 34 ................................ GTTGGCGAGAATGTGCCATAAAGATTAGCGGCAG 1567211 32 100.0 33 ................................ AGATGGTAAGCAAGGAGAAAAAGGGGACGATGG 1567146 32 100.0 35 ................................ AACGAGATAGGTCCTATCTGGCTTATAAAAATCAC 1567079 32 100.0 35 ................................ ATACAACGAAACGTTGTCAACGACATTCTCAAAAG 1567012 32 100.0 33 ................................ TTTTGAAGCAGTCAACGTCAGTCGAGGATTTTA 1566947 32 100.0 35 ................................ GCCATCTCCGGATGGTGATTACAATTTTGTAGTTT 1566880 32 100.0 33 ................................ CAGTTGATTCTGGAGCGTTAAAGGAAAGTATCG 1566815 32 100.0 33 ................................ GAACAACAGACGAGAAAAGACAGACCTAGAACC 1566750 32 100.0 35 ................................ TCAAGAACTTGGAACTGGTAAAATTACAGCAGGTC 1566683 32 100.0 34 ................................ ATCAACACCAGCTGCAGCTTTACGAGATGTTTCA 1566617 32 100.0 35 ................................ AACCATGCGTGATGTTTATCAGAAATTCAATACCT 1566550 32 100.0 33 ................................ CCTATAAGACATCTTAGAAGCTAGCTTAGCCAA 1566485 32 100.0 35 ................................ AGAAATCGTAGAAATTGCCAAACGTTTTATTGACG 1566418 32 100.0 33 ................................ CTTTTTATTTTGACACAGGCGCAGTATGTCAGT 1566353 32 100.0 37 ................................ TATTTGATTTTGGTAAGTCTGTCGTTGAAGCTGCTGC 1566284 32 100.0 36 ................................ AATTGTTCCGCCGAGAGATTGAAAAAGTGATGCAAT 1566216 32 100.0 35 ................................ TTGCTCTGAAAAAATACTATTTAATTTGTCTATTG 1566149 32 100.0 33 ................................ CATTTGTTTGTCTGACAAATAGACATTGTGTTT 1566084 32 100.0 35 ................................ TAGAGATTTATCATAAAATGCTGCGCTATCTGCCG 1566017 32 100.0 34 ................................ TACTCTAACAGGTACACAACCAGTTACATTTACT 1565951 32 100.0 34 ................................ CAACAGGAAATAGAAAACCTGCTGAAAAACTCTG 1565885 32 100.0 35 ................................ AAAAAGATAATCTTATCGCTTATATCCAACCAACT 1565818 32 100.0 34 ................................ TTTTTCCATCACTCCACCTCTTTCAAAAAATCTA 1565752 32 100.0 33 ................................ ATCGCAATTGCATCAACTTGAATATCACTGTCA 1565687 32 100.0 34 ................................ TTTTTTGGACTTATTTAAATCTCCAAAAAAAGAG 1565621 32 96.9 34 .............A.................. ATTTTGTGTTATTAAATAAAACTAAAAAAATATT 1565555 32 100.0 36 ................................ AATTTCTAAACCTAAATTATGAATATATTTATCACC 1565487 32 100.0 34 ................................ TCTTTAGTACTGTCGACCACCGTAAAGACATCAT 1565421 32 100.0 34 ................................ GTCGTATGTTAGCATAAGTACCTCCTTATCTTAT 1565355 32 100.0 35 ................................ TAGCTATTATAACTCCTTCAGAACAGTCAGGACAC 1565288 32 100.0 35 ................................ TTTTCTAACGGAATTAGTACTTTATCTCTTAATGC 1565221 32 100.0 34 ................................ GTTCTGATTTTGGCATGTCCGTCAAGGATGTCAT 1565155 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ===================================== ================== 35 32 99.6 34 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATCATTGATGGGGAAACAGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGAATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGATGCGTTTGGCTGGCAATGGCGAGGTTGTGGCGGTATCCAGTCGGTCACTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCACGGCTTGTTTTTGATGGAGGCTCAGAAGGCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //