Array 1 56-533 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATHJ01000001.1 Desulfococcus multivorans DSM 2059 ctg100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 56 36 100.0 40 .................................... CCCAAGGGCGGTTATGTTTCCTGCGGAGGATGAGGATATG 132 36 100.0 37 .................................... AAACTTACGGGCTTGATCTGCCATGTTTTTCTCCTGT 205 36 97.2 38 .........T.......................... TATCTGATAGGCGGTTAATCGCCCATCATCATATAAGT 279 36 100.0 37 .................................... TAACTGTGGCCTTTGCAACGATATTGTTTTCTTTTGG 352 36 100.0 36 .................................... GTGGGCCGTAGGCCCTGAACCCCGATTCCTTGATTG 424 36 100.0 38 .................................... TTTGACTGGGTCCATCATCTTGAAGCCTGCACATTGCA 498 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 7 36 99.6 38 GTCTGAACCACTGCCCCGATTCGAGGGGATTGAGAC # Left flank : ATTCGAGGGGATTGAGACTAGGCGATTAGCCCATCATCATACTTATATGATGATGG # Right flank : ATGAGGTTGGTGGGCAGTTCCATCGGGACATCCCAATGGTCTGAACCACTGCCCCG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAACCACTGCCCCGATTCGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 3273-4296 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATHJ01000145.1 Desulfococcus multivorans DSM 2059 ctg96, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================= ================== 3273 36 100.0 39 .................................... AAATGACTGCGGCAGAAACAAGGGCGGTTGTTAAATTTT 3348 36 100.0 36 .................................... GGTATTGGCCTCATTACCGGGTCTGATCAAACGTGG 3420 36 100.0 38 .................................... CTTTGCTTAAGCCCATATCGAAGACAAAAATCTTTTAC 3494 36 100.0 35 .................................... GTGGAAGGCTGGAAACGTCAACCGAAATAACCTCT 3565 36 100.0 37 .................................... AGAGTATTAGGATAGCCTCGACTTTCTGGAACCTATG 3638 36 100.0 37 .................................... TTTCATTAACAGTTTCCTTCCGTTTTCGGAAAATTCT 3711 36 100.0 39 .................................... TTTCGTCCCGTGCCTTCACAGCACGGGCAAATTTCATAG 3786 36 100.0 36 .................................... AGGATCAAGCCGAGAATACGCTCGGCCTCCATGAAA 3858 36 100.0 37 .................................... AAAAGTCTAATGCTCCCAAATTCAAAGAAATAAGATG 3931 36 100.0 77 .................................... TTGTTTTTTAGCCATTGTCACCATCATTCAGTTTGTGTTTGAGACTGCTTGCGGCCCTGAACGACACAGCTACTTTA 4044 36 100.0 36 .................................... TTGCTCCAACCAGATATGCGCGGATATCCGAGAGGC 4116 36 100.0 37 .................................... TGGATTCTGCCATGCAGGGACACTGGCAGCTCTTCCA 4189 36 100.0 36 .................................... CTGCTCGATGCTGTAATCGAACATGCTTCCGCCATA 4261 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================================================= ================== 14 36 100.0 40 GTCTGAACCATTGCCCCGATTCGAGGGGATTGAGAC # Left flank : ACCCTTCGAAGTAGATCGATGTGGTGTCGAAAAAGACGACGTTCTGGCTTAAAAAACATGTCGAACGTCATGGCCCGACACAGGTGATGCGCACGACCCGTTCGTCCCCGGCAACCTGTTTGCGCCGTCGGGACATCGGCTTGTAGCCCGGCCCAAAAAGACCAACATCACGGCTCCCGGGGAGGCGGTTTTGATAGGGTGAACGCCGACAGCGCAGGGCAAGGGTTTTGAGACGCCTTCCCCGCACATGATTTTCGATTTTTGCCGGCCGGAGGATGTCGCTGCTAAAATATCAAACAGATGCAGTGGGTTAAGACGATTTTTGTCGTGTTGGCCGGTGCGGAGATGTGCGGAGAACAATATGGTTAATATTCAAAGAGGCTTACATGAAATTTGTGCCGTTTTGGAGGTGGGGAAAATCTTCCCAAACACGTTTTTTGGGGGGATGTGCGGAAACCCTGTTGCAACCCCAGGAAAAATTTGCTAAAAAAACACCCAGA # Right flank : ACTTCACCAGGCAGGACATCGGTTTGCAGTCCGGTCCAAATAGACCAACACCACGGCTCCCGGGGAGGCGGTTCTGAAAAGGCGATTCCTCAATATCGCCCGACAGCCGTTGACTCGAATTTCCGCGTGATCGGCGGCTCGCAATTGTGCGATATGCCGGGTCGCCGGCTCATTACGGACTGCATTGATCGCGCGTTTGCATCCACCCGGGGTACCGACCAGCGTTAGCCGCTATTACCTTCCAATTATCCGACCTTCAGCATTCCGACAGCTCTCTGTCTTCATCACCTTATTATGTCGGATCTGTCCGATAGGTATTTATACCTATGCGGCAATAGGCACTTGTACGCATTGACTTGATCGGAAAAAGTATTTTAAGATCGCGCGTGGATCCGGCCGGAGGCGGCCAAAAAGCAGATCATTGTTATCGAAGCG # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAACCATTGCCCCGATTCGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 46953-47499 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATHJ01000127.1 Desulfococcus multivorans DSM 2059 ctg7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 46953 36 100.0 38 .................................... AAGTGTCGTCAGTTAAAAAATCAACGGCCCTGTCTTTG 47027 36 100.0 38 .................................... CAAAGCACACACCTGCCTATTTCCTGAAGCAGGATTTG 47101 36 100.0 37 .................................... TACTTCAACCCCTCGTGGGGATCCGGCGATCCCCTGA 47174 36 100.0 37 .................................... ATATTATTTCAGCCCCAGACCAAATCCATGCCATCGC 47247 36 100.0 36 .................................... CGTTGAAATAAACTTCTCTCATGCTAATCCCCTTTC 47319 36 94.4 35 .G...........T...................... TTATCATGGTAAAGGAATCCGTTTCGAACGTGAAA 47390 36 100.0 38 .................................... TTGTTTGCCCGCTTTAAGTAGAGGCTTACGTTACCTGC 47464 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 99.3 37 GTCTGAACCACTGCCCCGATTCGAGGGGATTGAGAC # Left flank : AAATAAGGACAATACCAACACGGTGAGCTGTGGGGAACTCTCATGGCTTTTAATGCAATGGGAGGCGGCTGAAAGCAGGATCAGTTCTGATTGGCAAACCGCCGTATCGGCATCGTGTTCACACTGCCCTCAACAGGCTTGTGGAAAAAGTGAAGTTTATGTCATTCCATCTGCTTATGGCGCGAAGGTTGCGGCGACCTGAAGGATCGATCAAGCAGGAGAGAGAGGCAATCCGTCTTTCCCGCACATGATTTTCGATTTTTGTCGGTCGAAGGATGTGGTCGATAAAATACCAAACAGATGCAGTAGGTTAAGACGATTTTTGTCGTGTTGGCCGGTGCGGAGATGTGCGGGGAACAATATGTTTAATATTCAAAGATGGTTACATGAAATTTGTGCCGTTTTGGAGGTGGGGAAAATTTTCCCAAACACGTTTTTTGGGGGGATGTGCGGAAACCCTGTTGCAACCCCAGGAAAAATTTGCTAAAAAAACACCCAGA # Right flank : CATAAGCAACACCCACGGTGTGGGTGCTCTTCGTGCCGGTCTGAACCACTGCCCCGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAACCACTGCCCCGATTCGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 1814-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATHJ01000004.1 Desulfococcus multivorans DSM 2059 ctg103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================= ================== 1813 36 100.0 37 .................................... TCAACCTTGCAACCTAATTCTTTTTCCAAAATTTCAA 1740 36 100.0 37 .................................... AGATGATCGGCATTAAAGCCCGACTGCGCCGCCGCGA 1667 36 100.0 36 .................................... TATCGGGTTTAGTGGAAAACAGACCAATGGACTTGA 1595 36 100.0 37 .................................... ATTGGTTGCCCACTCTACGCCTTCTTCACACGCATCG 1522 36 100.0 37 .................................... GGAATTATTAGGAATTAAAGCAATGGTTATGTTTTAT 1449 36 100.0 37 .................................... TTCCTCCTTTCAGCAACCGCAGTACCCATCTGAATCG 1376 36 100.0 35 .................................... AAACCGGGCCACCCGAAGGCAGCCCGTTGAATTTT 1305 36 100.0 39 .................................... ACAAAGCTGCCATCTTAATTATGTCTTTTTCCTGCATTC 1230 36 100.0 37 .................................... CACCGCGTTAACTCTTCAAACCGTTCACCATCAAAGG 1157 36 100.0 39 .................................... TAATTCGTTCAATTAATTTTAATCTTCCACATCTGAATT 1082 36 100.0 39 .................................... TCTGTGCTAATGCCCAGATGCCCGAACCAATCTTTTTTA 1007 36 97.2 36 ................................C... TTCGGTGAATACAGTAGCATCATAGGTTACTCCTTG 935 36 100.0 38 .................................... AGATGTACGCCTCATCATCACCCTCTTCATCATAGTAG 861 36 97.2 39 ................................G... TACGTGTGTATGTCCGAGGTGCGCACATTCGATGACACA 786 36 100.0 36 .................................... TGTGACCACGAGTAGTTCTTGTGTAGGCCACACTGT 714 36 100.0 77 .................................... TTTTCAGTCCCTTTTTCATGGCTTTCGCTAAAGGTGCTGCTGGTATGGCCCAGTCCATGTTGATTGGACCAAGATCA 601 36 100.0 37 .................................... AAGATGTCCGTTGAATCACATGGAATCCCATAAATCT 528 36 100.0 37 .................................... TTTATTGTTTTTATCAATATGTTTCTCAACATATTGA 455 36 100.0 37 .................................... AACAGACAATGCAAAACCAATAAAACATAACCATTGC 382 36 100.0 39 .................................... ATCTCGTCCAAGGCGCAGGCGTCCGCGACTTGACCGTAG 307 36 100.0 36 .................................... ACATCTCCATTGCCATCAAGACAGCTTCCTTGATTG 235 36 100.0 38 .................................... TTTGACTGGGTCCATCATCTTGAAGCCTGCACATTGCA 161 36 100.0 38 .................................... ATGAGGTTGGTGGGCAGTTCCATCGGGACATCCCAATG 87 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================================================= ================== 24 36 99.8 39 GTCTGAACCACTGCCCCGATTCGAGGGGATTGAGAC # Left flank : GATTCGAGGGGATTGAGACTCCCGCGTACAACCCGGCCCCCATGCAGGCAGCT # Right flank : CTAGGCGATTAGCCCATCATCATACTTATATGATGATGGTCTGAACCACTGC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAACCACTGCCCCGATTCGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 7-261 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATHJ01000003.1 Desulfococcus multivorans DSM 2059 ctg102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 100.0 36 .................................... TCTATAACCCGTTGAAAGCACTGTGTATCTGGCTCG 79 36 100.0 37 .................................... ATGTGATTCCACGCCATCCTGGCGAGGGCTCGCACGA 152 36 100.0 38 .................................... ATGCCTGTGCACTCTATATCGGAGAGTACTCGCATTGT 226 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 100.0 37 GTCTGAACCACTGCCCCGATTCGAGGGGATTGAGAC # Left flank : GCACGAG # Right flank : CTCGCCTTTTCTTTTCTAAAAAATTTCTCCCGCTTTTGAAAAATCCCTCCTCAATGCCGTTTAGCGCGATAAATTGAAGATGATTCCTGCCTCGGTTGCCGCCACCGGCGCGGCCGTTATCCCTGTTGTCGGCGCTGCCGCCGGGCGCCAAGATTGCCGGCGGCAGCGCCCGCTATCAACTGCTGAGAACAGAGGACGGAATGCCGCCCGTAGACGGCGGTTCATAACAGCAAACCAACACGATCAGTACGATTGATCTCGATCGGATGTTGCCGCCCCAACATCCCAAAGAAAGGAAGGCTCAATGACGCTCCTGAAACGCATGTGGAAATGGCTTACGGCTTCATCCTCACGGGCCGCGAGAAAGGGGCACCCGGACCTGTATCCCCTGAATGTGGCGGCACTGGCTCAAGAACTCAACCTTGTCGATGAGGGTCGGCGCCTGGGAGAGGCGGGGATTCCCGAATCCGATGCGAAAACCTTGACCGGACCGGAGGCCG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAACCACTGCCCCGATTCGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 5694-7043 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATHJ01000003.1 Desulfococcus multivorans DSM 2059 ctg102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 5694 36 100.0 38 .................................... TTGAAGTAGAAGTCATGGCAATTTTCGCAGATGATGCA 5768 36 100.0 37 .................................... AACAGCCTCATTAACAACCGCAACTGCCTCAGCATTT 5841 36 100.0 37 .................................... ACCCCGCAGTGGGCGCAGGTTCTCACCTGCTCATCAC 5914 36 100.0 37 .................................... CGCTTTCACCCTCAACCTTTTTAAGAATAGACTTAGC 5987 36 100.0 38 .................................... GATGAGAGCGTTTCTTTTCAATTCATACTCACGATTCG 6061 36 100.0 36 .................................... GTATTCAACGATGCAGCTTAGCATGTCAGCGACTTT 6133 36 97.2 37 .......A............................ TTGAACATACTTCGCAGCAGTATAAGGGCACCATGTT 6206 36 100.0 38 .................................... TGCATTTTCATTGTGCTTAGTCTCCTTATTTTGTTTTG 6280 36 100.0 37 .................................... CCGGGCAATTTTCCGGGAAAACGATTTCCGCGGAACC 6353 36 100.0 35 .................................... GAGACCGTTGATTGTTTCCACCTTACCATTAACGT 6424 36 100.0 35 .................................... CCCTCGATCTTTAGAAATTGTTCCGCAGAGATATA 6495 36 100.0 38 .................................... GAGGATCGTGAATTCTCCTGAGTTTTCTTCAACGTTCG 6569 36 97.2 37 .............A...................... ATCACGTTTTCGCCTCCTTTTTTTATTACTGAGTAAG 6642 36 100.0 38 .................................... TTAGATTTGGGAATTGACGCTTTATAGACTTTCATCTT 6716 36 100.0 37 .................................... CCCCAACGCGGCAAGGGCTATCTTTCGGCTCAATTTG 6789 36 100.0 37 .................................... TTCCTCCTTTCAGCAACCGCAGTACCCATCTGAATCG 6862 36 100.0 35 .................................... AAAACGGGCCACCCGAAGGCAGCCCGTTGAATTTT 6933 36 100.0 39 .................................... TCAAAGCTGCCATCTTAATTATGTCTTTTTCCTGCATTC 7008 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 19 36 99.7 37 GTCTGAACCACTGCCCCGATTCGAGGGGATTGAGAC # Left flank : CATTGAAGGGATTTTATCCGATCCCCCCCTGTCCAACGCCGATTTTATCCGTCGCGTTCAGGGCATTTTCGATCAAAGCCGCGAACTTCAGTGCCGTCACTTTGTCCGGCTCAAAAGCACCATTGACGACGCCGTTCAATCCGATCGGGCGCGGCTGATGGTTGAAAGCTTCTTCTACAAAAGCGAGGTCCGGCGATAATGCAGGATAGGATTAGAGAGAACGGCCCGAACAGGTTTTTCCCCGCACATAATTTACGATTTTTCCCGAAACACCAGCCAACTGATTACAATAACTTTAAAACACAATGGGTTGGGTTGTTTTTTCTCATGCGCGGCGGGAGGGAGATGTGCGGGGAACAATATGGTTAATATTCAAAGAGAGTTACATGAAATTTGTGCCGTTTTGGAGGTGGGGAAAATTTTCCCAAACACGTTTTTTGGGGGGATGTGCGGAAACCCTGTTGCAACCCCAAGAAAAATTTGCTAAAAAAACAGCCAGA # Right flank : CACCGCGTTAACTCTTCAAACCGTTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAACCACTGCCCCGATTCGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 8889-9135 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATHJ01000097.1 Desulfococcus multivorans DSM 2059 ctg52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 8889 28 100.0 45 ............................ TCAGGCGGAACATGGTGGAAAAGGAGATATTTATGAAGTCTCAAT 8962 28 100.0 45 ............................ CAAATTGAGCCGAAAGATAGCCCTTGCCGCGTTGGGGGTCTCAAT 9035 28 100.0 45 ............................ CAAATTGAGCCGAAAGATAGCCCTTGCCGCGTTGGGGGTCTCAAT 9108 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================= ================== 4 28 100.0 45 CCCCTCGAATCGGGGCAGTGGTTCAGAC # Left flank : CCAAAAAAAATGTTGAAATGTGTTGTGGAGGACGCTTCGAAACCCGCCGGTTTCGAAGCGTCTTTGCGTTCAGCGCCGCGGCATCGGAACAGCGCCTTTTCCAGGCGGTTCAATCCCAACGTTTCAACAGCATCCAGAGTTTCTGTTCATTCCTGGAATACAACTTTCCAAGAAAGATAGCCGTTCTCAAATTCGGGCGGCACAGCCGAACCAGCTCCCTGAAATACAACATCGTCAATTCCCGGCCTCCTCTCCCTACCTGCTTTCACCTGCTTGAACATCGGAAAATGGATGTCCGTGCAGTCAGTCTTTCTATCGTAAGCGTCGAAAGACGTGCACAGGATCAGTAACGGTGTGACTGGTGGATTTTTCAGAATAGTCCGGGAAAAATTTTGAGAGGGGTGGGGCAGGGTGAACAAAATACGCAGTTGTGCGCTTGGGCAATGGTTCAGACGGCGTCGCCGGATGTCTATACAGGAAAGAAGGCGACAAGTCTCAAT # Right flank : AAGATGAAAGTCTATAAAGCATGCATTCCCAAAGCTAAGTCTCAATCCCCTC # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCTCGAATCGGGGCAGTGGTTCAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 51699-57633 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATHJ01000087.1 Desulfococcus multivorans DSM 2059 ctg43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 51699 36 100.0 36 .................................... ATCCCATTCTTCAGGATGAAGTCGGGAGTGTAGGTT 51771 36 100.0 35 .................................... ATCTTAGTTAAAGCTGTCCAGGTTATGGACTTCAT 51842 36 100.0 34 .................................... GCGTTGAATATCCCGCTCATGGCGCTCGTCATGT 51912 36 100.0 34 .................................... ATGCTATCGGGGAGAGGCGTCTGTGTGTATCCGT 51982 36 100.0 35 .................................... CCGTGAAGGACGATTCTTGGCGGCTTGTTCTTAAC 52053 36 100.0 35 .................................... CGCCGTTGCATATTTAGGTACGAAGGCCGTCGATC 52124 36 100.0 35 .................................... TTGTAAACAAGCTCCTGATGCATGATGCCAACGGG 52195 36 100.0 35 .................................... CGGAATATGAGTCGGCGAAGGAGCGCTACCCCTGG 52266 36 100.0 36 .................................... CCGTGAAGGACGATTCTTGGCGGCTTATTCTTAACC 52338 36 100.0 34 .................................... CGGGCATAGCGGGAAGCGACATAACTCGGCTGAT 52408 36 100.0 36 .................................... CCGAATATTGTCAGGAATGTTTCGGTTGCAGTCAGA 52480 36 100.0 36 .................................... AAGTCCGATATATCCGGATGCTTGTGATTAAGGCTT 52552 36 100.0 35 .................................... TTATATGAATGCCCAAAGAAAACTTGGTAGGGATA 52623 36 100.0 36 .................................... TCGTACCAGACCCCGGCTCGGACGACCGGAGGATCC 52695 36 100.0 35 .................................... TCGAGATCGTTGGACCCGGGCGTGCCATCCCGACG 52766 36 100.0 34 .................................... TTGGCGTACGGGGCGGTTACGTCCGTAACTGTCA 52836 36 100.0 36 .................................... TTGGCGTACGGGGCGGTTACGTCCGTAACTGTCATT 52908 36 100.0 37 .................................... TGGAAGAAGCTGACCCTTGCGCGAGCCAGACTTGCGA 52981 36 100.0 35 .................................... ATCGTGGGGCCGACCGGGGAGCTGGTGGCCGGGCC 53052 36 100.0 36 .................................... CCTCACGGATATCAAACAACAACCACAAAGAAAGGG 53124 36 100.0 34 .................................... TTGTCGGCAACACGCCTGATATGCTGCACAACTT 53194 36 100.0 35 .................................... CTCGATCCACTGATATCCCTTGGATAGATCAAGCG 53265 36 100.0 35 .................................... CGATCTTTACGAAGACGGCCTTGGGCCTGTACCAA 53336 36 100.0 35 .................................... AGACAGATTGAGCGCGAGAAGCAGGCAGTCACCAG 53407 36 100.0 35 .................................... TCGGCCATAGTGTCAATCCTAACACCCTTTGCGTT 53478 36 100.0 36 .................................... TTTAAGATCGAGGTACTGGGCGATCGTAAGGCAGTC 53550 36 100.0 35 .................................... TATCCCTTGCCTGCCATGCAATGGCAGTGCCTTCA 53621 36 100.0 35 .................................... TACACCGAAGCGTCGGTGGATACGGCATGCAGGGC 53692 36 100.0 34 .................................... TTCCTTTAGGTTATTAAATGTATCTATTTGGCTT 53762 36 100.0 35 .................................... TCGATCAGGCTCTCGTCCAAATCGACCCACTTGAT 53833 36 100.0 39 .................................... TGACGTATCCGGGTGTGTTGGTGGAGCCTGCGGCGACGA 53908 36 100.0 34 .................................... GCCTTGTTATGGATGGCAAACTATGCCGCGTGGC 53978 36 100.0 37 .................................... CCGCCTTATGTCATGAACGTACAGGCGTTTGAGCAGC 54051 36 100.0 35 .................................... AGGCTTACCGGGCAAAGCAGGCAGTCCCAGCGGAT 54122 36 100.0 35 .................................... GCGGCGGAAGGTTGCGGCAAGAAAAAAGCATTGGA 54193 36 100.0 36 .................................... GTATGGGATGCGGCGGAAGCGGCCGACAGGGCCGCA 54265 36 100.0 35 .................................... TTCACCCTGAAAAAGAAGGTTACCATACCGCCGCG 54336 36 100.0 34 .................................... CTGTTATAACTTTAATGTAGTACAACTCACTCAA 54406 36 100.0 35 .................................... CTTTTAACGATATTTCAGGCAATGAGGTTAGGTGC 54477 36 100.0 35 .................................... ATTGCTTTACTTTTAGCAGGATTAAAATTATTGAT 54548 36 100.0 37 .................................... TCACCGACAATCATAAGTTTCCCACGCAAATCGGAGA 54621 36 100.0 35 .................................... CCGAACTCCGGCGTAGAGCCGGATCTCGATCCCGA 54692 36 100.0 34 .................................... GTGGAACCGCTGATTTCATCATGCCCGAACTCGT 54762 36 100.0 35 .................................... GGGACCTAACCAAGCCGCGCCGAGAATCATGAAGT 54833 36 100.0 36 .................................... TATGGATTTTTGCCCAGGGCGCTTAGCACGCCTTAT 54905 36 100.0 34 .................................... ATCCAAAGGGCAACCAGGATTTGTAAGGCGGCGA 54975 36 100.0 35 .................................... CCGAAATAGATCGTGTTGATATTGGCGTAGATGAT 55046 36 100.0 34 .................................... TCCCATCGTGCAGTTCTTTCTGATATTGGCTCGA 55116 36 100.0 38 .................................... AAGAATTGAAAGCGGCATTTGAAAAGTCGCTTCGGCCG 55190 36 100.0 35 .................................... AGCATTAGACTGAACAGTCGTGAATTTGACAGGGA 55261 36 100.0 35 .................................... GTTGGCAGGCCATTGAATATCGGCACAAGCTCGGC 55332 36 100.0 35 .................................... GTTGGCAGGCCATTGAATATCGGCACAAGCTCGGC 55403 36 100.0 34 .................................... TCAGTGTAAACAGTGGAATCGTAACCGCGCCGGT 55473 36 100.0 37 .................................... ATTAATGAATTGCGAATGTCGATCCATGAGGTGAAAG 55546 36 100.0 34 .................................... ATTTCAAATCCCTTCAAAGCAAGACCTACCCGAA 55616 36 100.0 36 .................................... TGGTAGGTCGGTCAAGTCCTCGGTCAAGTCCTCGGT 55688 36 100.0 35 .................................... CCGGCATTCAAGCCTGAGGATATCGTCCATCTCAA 55759 36 100.0 35 .................................... CTGGATAAGCAGATCAATATGCTGATGGAAATGGA 55830 36 100.0 34 .................................... TGATCCCCACCGTAGGCTTGCCATAGGCGCTCTG 55900 36 100.0 35 .................................... CTGAAGCGAGTGATCATGCCTGTTTACAACAAGGG 55971 36 100.0 34 .................................... ATGGGGGACAAGAGCGATAATATCCCCGGCGCAG 56041 36 100.0 35 .................................... AAGCCTTATGACAAGATGGCCAAGGGTAAAAAGGT 56112 36 100.0 34 .................................... TACAAGCCGAAAAAGATTTATCGAAGGAATGGGA 56182 36 100.0 36 .................................... ATCGAGCAGGATCACATCGCATTTCTGAGCCTTCCG 56254 36 100.0 34 .................................... AAGTTGGGGGCCAGAGCGGCGCTGTGCTTGGCAG 56324 36 97.2 34 ..........................T......... CCCATGAGGGGAATGTAATCGAATTGAAGCGGAC 56394 36 100.0 36 .................................... CGTTGTCGTTGAAGCTTGATGATCAGCTCCAGGCGG 56466 36 100.0 34 .................................... GCCTGAAATAGTTTCTCCTGTTCCGCCGTCTTGA 56536 36 100.0 35 .................................... TTGTAGACCGTTACAGGAGCCATCAACAGCACAGG 56607 36 100.0 34 .................................... CGGAGCAAAACGTTGTTGCGCTTCAGCGGATCCT 56677 36 100.0 36 .................................... AGGTCGAAGACCGGGCAAAGAAGATTGTTTCGGAGC 56749 36 100.0 34 .................................... TTTTGATCAGACAGATGAAGCAGTATGGCAACGA 56819 36 100.0 36 .................................... TGTGACACTACCAGGATCAACAACTGTCATTGTTGT 56891 36 100.0 35 .................................... ACGGAGCCCCTCGACTACACCCGGGTGGATCCCGT 56962 36 100.0 34 .................................... TGCTAACCCGCCGGCAATGTGAACGGGACCCGAA 57032 36 100.0 35 .................................... GGACGTTGCACGATATTTTCCAGGGCGGTGAGATT 57103 36 100.0 35 .................................... TTGCACTTCTTTTCCGAAGGCCCAGCAGCCTTCGC 57174 36 100.0 35 .................................... TTGTGTGGTCGACGGATCGGCTCGGGTGCCGGCGA 57245 36 100.0 35 .................................... GGGCTTTGATAGCCACAGCGCAAACGCTCCGAGCT 57316 36 100.0 35 .................................... GGGCTTTGATAGCCACAGCGCAAACGCTCCGAGCT 57387 36 100.0 35 .................................... AGATGTCCAAAAGGAGGGCCGTCATTCAGCAACTC 57458 36 100.0 34 .................................... TCGTCGGAATACTCCAAGCCGAACAGATCCACCA 57528 36 100.0 34 .................................... AGTTGTTCGATCTCCCCCTCGAACGCCCGCTTAA 57598 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 84 36 100.0 35 CCGCACCGATCTCCGATGCCGAAAGGCGTTGAGCAC # Left flank : CGGGACCCAAAGCGGTGGCGGTTGGTATTCAAAACCCTCAAGGGCAGGGGAGAACATTTGCAATATTCCATCTTTAGAGTCAGGGCCAACAAAACCCAGATTGAAGAGCTGAGATGGAAGCTCGGCAAAATCATGACGGAAGAGGATGATCTCATGCTCGTTCGCCTGTGTTCCGGCTGTGCACAGAGAGTAATAGACAGTCGGGATAAGGAAAAATGGAAGAAATCACCACCTGCATTTGAGGTTTTCTGATTCAAGCACCACCGAAATGCGTTCGACATATGCCAAATACTGAACGATAAAATCGTGATGGTTTTGCGTTTGTTAGGAGTACCGACATTACGAGGTGCTTGAAAACGATTATTCATAATAAAAACAATATGTAGATTCTTATATATTTTTATCGAATGGAAATCTTGACGGCTAACTGTGCTATTTTATAAACATACTTGAAGCGGACCCGCGCAAAGTCTCTCATATCAATCTATTAGAGGAGCGGA # Right flank : CTCTTCATATTGAGCGAGGGTGATCAATATGCTGCGCACGGTTCCGCGAGGCCGTGACATCCTGATTGGAAACGAAGGCTGCGGTTGATCGCGGGCTTATCCCGCTGCCGGGCGCTCGTGTCGCCGCGACGGCAAAGGGCTCGATCGCTTTCGCCTCTTTAGTTCGGAACCATTTGCGGGCCGTCGTCGCTCCCGCATGGGATCCCGGGAGAAAGCTCTGTCCCAGTCGCCGCGTGTCAGCGGCGTTCTTAAACTGCACCAACCCCGTCGGGCTGAAAATGCGTGATCGATCTTCTTCCTTTCTTTTCCTCTCCCATCATCTTCTTCCCAAAACATCGACTTTTTCCGTACCATCACATGAGGCGGTACATTGCCGATAGCGCGAAACCGGAAAAAGAAATGTCGTCATTGCGGTACGGAATCAGGGCGGACACACAGGTCCGCCCCTACGGTGACCGTGATGTCATATGATCTGGCCGTCGTGGCAGGGGGTTGTCGCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCACCGATCTCCGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //