Array 1 1233-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEOR01000081.1 Salmonella enterica subsp. enterica serovar Typhimurium strain HS_5257 68_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1232 28 96.6 32 -............................ GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1172 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1111 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 1050 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 989 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 928 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 867 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 806 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 745 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 684 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 623 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 562 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 501 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 440 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 379 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 317 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 256 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 195 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 134 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 73 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GGACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11026-10282 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEOR01000100.1 Salmonella enterica subsp. enterica serovar Typhimurium strain HS_5257 82_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 11025 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 10963 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 10860 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 10799 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10738 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10677 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 10616 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 10555 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10494 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10433 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10372 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10311 29 96.6 0 A............................ | A [10284] ========== ====== ====== ====== ============================= ========================================================================== ================== 12 29 99.4 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCCCGCGCCAGCGGGGATAAACCGCCACGTTCGGCGATGTTGGCCCCATCGGTCC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8893-9043 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEOR01000110.1 Salmonella enterica subsp. enterica serovar Typhimurium strain HS_5257 91_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8893 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 8954 29 100.0 32 ............................. TTTTGATACGTAGGATTCATTACGCCTCCTAG 9015 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 338-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEOR01000156.1 Salmonella enterica subsp. enterica serovar Typhimurium strain HS_5257 137_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 337 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 276 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 215 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 154 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 93 29 100.0 32 ............................. TTTTGATACGTAGGATTCATTACGCCTCCTAG 32 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCCACCGCGCTGATTAACGACGGACTGTTAC # Right flank : GGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //