Array 1 69900-70516 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXX010000001.1 Listeria innocua strain FSL L7-0288 NODE_1_length_645340_cov_44.555558, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 69900 29 100.0 36 ............................. TTTGTTTTAGTAAGCATATCTCGAATAAATTCAAGT 69965 29 100.0 36 ............................. ATCTATAACACTAAAACAGGCAAAAACAGGAAAATC 70030 29 100.0 37 ............................. AGTGTTTATAGACGCTTTCATGATGTGGTGGGACGAG 70096 29 100.0 37 ............................. TCTGTGTAATAGGAAGTACGTTTTGCGACTGGTGCCA 70162 29 100.0 35 ............................. ATTCTTTTTCAAAGCTACTTATATACTTGCCTTCC 70226 29 100.0 38 ............................. GACAATTTAGCAGAAAAATTAAGTGTTAAAGCAGTTAA 70293 29 96.6 37 ................C............ TCGTTAAAAGTGTCATGGTTAAGCTTCTGCATTAACA 70359 29 100.0 36 ............................. TTTGCAATGTAAATCTGATCTGCTTCTGCAGTTAGT 70424 29 96.6 36 ..................A.......... AAAGTTACGGCTAAATACATGCCTAAGCTTCTTGTT 70489 28 75.9 0 ............CT.CA......-A...G | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 96.9 37 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGTGTACGTGCCACAACCTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAGATATAAGCAGAAAACAGCAACTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAACACCGAAAATCGACAGCAAGTTGTGAATGATTAGAGGAAGCGAAGTTTGGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATCTGATTTGGAACAAGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGCGCACGG # Right flank : GCCCAATATATAATCTTTGCTCACATTTTAAAATTACATTTTCAATTTATATCCATTAAAATATTGCTTTTACCAGCTCTCTCAAAAACTCAAACATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTTCTCGCAGTTTTATTCTATGGGTGTTCATTACAAAACGAAGGAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAAGTAGATATTTCGGAACCGTGGTATTTAAGTGATGATAAATATGTCGCGGTTGAAAACTATATTGCGCTTGAAAAAAATGAAGAATATACCTTGTTTCTAAACGAAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 17680-19280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXX010000016.1 Listeria innocua strain FSL L7-0288 NODE_16_length_26514_cov_89.434353, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================================= ================== 17680 36 100.0 30 .................................... ACAACTAGAGCACCTTGCATAGCTGAAAAA 17746 36 100.0 30 .................................... AATGAAACGTGGGGAAATGCCTACCGAAAA 17812 36 100.0 30 .................................... TGCAGAAGGCGTAGAAGCGCACATTCTTGA 17878 36 100.0 30 .................................... CATCGAAAATTTTTTTGAGTCGAATGGTTC 17944 36 100.0 30 .................................... ACAAATTATCGTCATGTGTAATAGTTATAT 18010 36 100.0 30 .................................... TAAGCTGTTTCGAGATTATTTCGTTATCTC 18076 36 100.0 30 .................................... CCATCAAGCAAGCTAAAGAACAAAAGGAAC 18142 36 100.0 30 .................................... GTGCATTTACTGGTGAATTCCGAAAAGCGA 18208 36 100.0 30 .................................... TCTAATGTAAATGATAGCCAATATAATACA 18274 36 100.0 30 .................................... TAGATAGTTTCTGCTTTCTCGATTACTTTC 18340 36 100.0 30 .................................... TATGATAGATGCATTAAAACTTTCTTTGAC 18406 36 100.0 30 .................................... TCTAGTATTCGTCTTTTCTCTATGTGTGCC 18472 36 100.0 30 .................................... TATGGACACTGTAAATAAGACACGTGGAGC 18538 36 100.0 30 .................................... TAGGTGGATAGATAGTATTCTAAAGTCTTT 18604 36 97.2 30 ..............C..................... AAGGTATAAGAAAAGAGGTGGTCATATGTA 18670 36 94.4 30 ..............C...................G. AGAACTATTGCTTCAGTTATAATAGATATT 18736 36 97.2 35 ...................................T GAAAAGAAGAGTTGGATGTTTCACTTGATGTTATT T,T [18750,18754] 18809 36 86.1 27 .......G...................A.....GCT ACCTTTAAAGGCTTCGATGATTAAAGC G,G [18830,18839] 18874 36 88.9 29 ........A......A.........A...G...... AGATTAACGTGTAGAAGAGCCCTAGCAAT 18939 36 91.7 28 .............................G....TT TTATTCAGCACCAGGATTAGAAAGGCAC T,TT,T [18953,18957,18969] 19007 36 94.4 137 ..............C..........A.......... AAAAAAGATGTTAGAAGAATGAAAGTTCGATTGATTTTAGAGCTAAGTTATTCTAACAGTACACCTATTTATAAGAACTGAGCTATGTAATTTTTATACTTAGCAAACTATGGTAAACCGTTATCTCTTAGGAAATG 19180 36 94.4 29 .........T....C..................... TACTAATTTGAAATCTATTGTGGAGTGTT 19245 36 83.3 0 ..............C..........A...GT..GG. | ========== ====== ====== ====== ==================================== ========================================================================================================================================= ================== 23 36 96.9 35 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : GATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTACGAGCTTTTGGAACATGAACTGGATTTAGAGGAAGATGAAATTACAGTTATGGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCATTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGTTAAGACGATATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTAGAAAGATAAAGGGATTTTCGCAGGTTATCTTAGATTCAGATTATTTTTTACAAGTGGAAAGTGGAATGTAAGTATCCAAATGTTCTTTGAAAACTAAATAGATTTTATGTGAACCATACAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGGATAGAAAAATTCTACGAG # Right flank : CTAAAGCTTAGGAGATTATATGGACAAAACAATGAGCCTATAAAGTGTTTTTTTAGTGAGCGGAAAATAAATATGTATCGCTTCTATACATACTCAAGAGATGAAATTAAAATATAGCATCAAAAATTATCCTGAGTAATAAGCCACTGTAGACTTTGGTTCCTTGTCATTACCTTTTAAAAAGTTTTTTCTTTGTCGTTTATCATCTACTTCTTCAAATTCTGCGTTTACTATGGCAAGTTAATGCAAGCTCAAACGAGGATAGGCTAGAGCTTAGCTTAATTGTGATTCTAATTTCATTCAACAAGCATGATTAGTACATCAAAAACATGAGAGAGAAAAAAACAACAGAAATCCTAGGGAATTTAAGTAGCGTATTGTTGATGGTTAGGTCTGTGTTAACTGGATTTAAGAGAAAGAAATATATTCGTAATGGATTAAGCAAAAAAATAGCCAATCTACTCTGAGTTAGTACAAGAATAGATTGGTTATTATAATAG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.42, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-34] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //