Array 1 3931283-3932451 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVW01000001.1 Citrobacter koseri strain NCTC11077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3931283 28 100.0 32 ............................ AGAATCTCGCTAAGGCCGTAGAACTCGGCCTC 3931343 28 100.0 32 ............................ TCTGTCGCGTCTGCATGCGGCGTATACGAAGC 3931403 28 100.0 33 ............................ ATCAGCGAAACGACGGCGCAGCTTAACCGACAG 3931464 28 100.0 32 ............................ ATTCATACAGGTATGCGACACGGTGAGCTGTG 3931524 28 100.0 32 ............................ ATAAAAAAGCGCTTTCTGATTGTCGGTGTACC 3931584 28 100.0 32 ............................ AGGATGCCCGGTGTTGTTCACCATCAGATGTG 3931644 28 100.0 32 ............................ ATCCGGTAGCATATCGAACTGAACCGTGACTA 3931704 28 100.0 32 ............................ CGACAGAAGTTAAGCAGACTGATCCGCGATCG 3931764 28 100.0 32 ............................ CATACGTAGCCGGTTAATTTAGTGCTCATGAT 3931824 28 100.0 32 ............................ ACCGCATTTCACTTTTGGTAGGGCGGGCAAAG 3931884 28 100.0 32 ............................ AATAGCAGAACCCCATCCCATAGTTTTTACTC 3931944 28 100.0 32 ............................ GCAACTTTCGTAAACATGCTCGGCAGCACAAA 3932004 28 100.0 32 ............................ GAACACGTCATCGTTAGGATTATCACCTACAC 3932064 28 100.0 32 ............................ AGGTGGCGAGGAAAATTGAAACGGCAGCAAAT 3932124 28 100.0 32 ............................ TCATCAAAGCGGCGACAAGTGAAACATGGTGG 3932184 28 100.0 32 ............................ GTAAAGAAGCGGAACAGGATAGCCTTGTGCTG 3932244 28 100.0 32 ............................ TTTTGCTGCGCCGGTGAGTCCGTTCCATGCCT 3932304 28 100.0 32 ............................ TGATAACGAGAAAAAACGCACGACGCTGGCCG 3932364 28 100.0 32 ............................ ACATGGGCATTCCATTATCGCCGACTTTTCTT 3932424 28 85.7 0 ......................ACC.C. | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATCAGAAAGGCGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTGACTGGCTGGCTGAGAAAGGCTATGACCGCGCGATGGGCGCACGTCCAATGACGCGCGTCGTCCAGGACAACCTGAAAAAACCGTTGGCAAACGAGCTGCTGTTCGGTTCGCTGGTTGGCGGCGGCCAGGTGACCGTTGCGCTGGATAAAGAGAAAAATGAGCTGACGTATGGCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCCGCGCATTAATCTCGTAACCGGTAAAATCTGAACGCCAGTCGCGTTCAGATAAACTCGCTAAAATCCGTAATCTCTTTTGAGGTTACGGATTTTTTTTGCCGCCATGCCCCGGATACCTGGAAACCCTTTTTTTGAGTGTTTTTTAACGCTATGATTTTTATGTGTTTATATTAGGTGGCGATAAAAGGGTATTTAATCATTTCGTTGATATTTTTCTTTATTAACACCATGATAGCGACGAACTGCTTCA # Right flank : ACCACAAATGTAATTATTTATTTTGAAAGCTCTTTTGTTGATTTTTATCATTTCATCTGCCGGAGCCTCATCAGTACTATCGATAACACATAAAATGACGGGGTTTAAATAGATATGTCTGCAAATTCAATTATGCCTTCGGATTTAAAAACCATTCTGCACTCTAAACGCGCCAATATATATTATCTTGAAAAGTGCCGTGTGCAGGTAAATGGTGGGCGAGTTGAATACATTACGAGTGCAGGTAATGAATCATATTACTGGAATATTCCTGTCGCGAATACTACGGCAGTGATGCTGGGCATGGGCACGTCAGTGTCACAGGCAGCGATGCGGGAGTTTGCAAGGGCTGGCGTGATGGTTGGCTTCTGTGGCACTGATGGTACGCCGCTTTATTCCGCAAATGAAGTTGATATTGATGTATCATGGCTGTCACCGCAAAGTGAATATCGGCCGACTGAATATTTACAGCATTGGGTCTCTTTCTGGTTTAAAGAAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3944472-3944859 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVW01000001.1 Citrobacter koseri strain NCTC11077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3944472 28 100.0 32 ............................ CCAACGGCATGGTTAATATTTCCCAGGCGGTT 3944532 28 100.0 32 ............................ TATGTGCGGGTAAATCGTCCATTTTTTGAGCA 3944592 28 100.0 31 ............................ GAAAGGGGGTAAAAAATGACCACTATTACCA 3944651 28 100.0 33 ............................ TGAACAGCACCGCCTACAAGACTTACCCCTGTT 3944712 28 100.0 32 ............................ TTGAAGCAGAAAAGCGCAAAAGAAAAGCACGC 3944772 28 100.0 32 ............................ TCTATCCCCTCTTTAGCAGCCACCGCCGCCAG 3944832 28 85.7 0 ....................T.C..T.T | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAACTGCATCACTGGCCCGGACTGAGTCTGGCTTCAGGTAAACATATCCACCGCTGGGAACTCTTTGGTCCACAGGGCGCGCGCGCTGAAGTTCACTTTACACCGCGTTTGATCACCACAGACATGCTGGCGCTGCGTGAAGCGGCCGTTGCGGGCGTCGGTCTCGTTCAGTTACCTGTTTTAATGGTGAAAGACCAACTGGCTGCGGGGGAGCTGGTTGCCTTGCTGGAAGGATGGGAACCCAGAAGAGAGGTGATTCATGCGGTATTCCCGTCCCGCCGTGGATTATTGCCGTCCGTACGCGCGCTGGTGGATTTTTTGACAGAAGAGTATGCGCGGATGGTGGAAGATTAAAACAGAGCGCAATATACCCTTTTTTATTTTATGTTACTAACTTATTGATTTTATTTTATATATACAACTTGGGTGAAAAAGGGTCTGACAGGAAGACGTTGCGTTTTTCTTCAATAAATCAACGTGATTGTCTGATATTATTCCT # Right flank : TTTAATGTAGAAGGAAGGGACGCTGCGGGGAATAAAAATAACGTTAATTCGCATCAACGGTATTCATGCAGGAAAGGGACAACAAAAAGGCCGGATAAACCGACCTTTTTTTATCTTTACGCCACCCGGGCGTGAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAATTCTACGCGGAACATGGTATTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTTTAAATAAGTAAAGATTTGCGCGTTTAAAACGCAGCAAATCAGGTTTGGCGCATTACTCCGAAAAACACGGCAAAGCCGCAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //