Array 1 12890-16092 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAHK01000043.1 Limosilactobacillus fermentum strain DS13_7 DS13_7_43_length_16254_cov_74.862033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12890 29 100.0 32 ............................. AATCCCATACTCATTTATCTCCTAATCTTCAT 12951 29 96.6 32 ............................C AAGAACGGTTGACACTGCTTTTTAAATGTCTG 13012 29 96.6 32 ............................C TTTGCCGGGATCACAATGTTTCCTATCAAGAA 13073 29 100.0 32 ............................. CATAAATTAGTTTGCGTGCTTCTGACTCTGGG 13134 29 100.0 32 ............................. GAAAGAACTCGGCGACGTATATATCAGCGATA 13195 29 96.6 32 ............................C TGTCTGTTGAGTACCCGTAGCGGTCTGCTCAA 13256 29 100.0 32 ............................. AGCGGTACTGTTCTTCTGAATCGAAGAGATAG 13317 29 96.6 32 ............................C GTGAGCAGCGTTTGATTAGCAAGTGGAACCAA 13378 29 100.0 32 ............................. AATTGCTTGCTTAAGCTCCTCAAGATCCTCTA 13439 29 100.0 32 ............................. GACTTTCATTTCACGGCTTTGACCTGAGTCGG 13500 29 96.6 32 ............................C TCGTCCATTTGGTGAGTTAGCTTTTGAATTGA 13561 29 100.0 33 ............................. CATGAACGGTGAAGTAGCGCCGAAGCACTGTGG 13623 29 100.0 32 ............................. CATGGTTGATAAAGCCGACGGCACTCAAAAAG 13684 29 96.6 32 ............................C TGAGGCGATTGCGACGGCTGATGAGGCTAAGG 13745 29 96.6 32 ............................C AAGGTGTCACTTTACTCGATGAAGTCATTCTT 13806 29 100.0 32 ............................. CTTACAGACCTCGCCAGGCTCCGGCTCATAGA 13867 29 96.6 32 ............................C TGAGCAATTGAGTCGCCCAGCCGGTCAAATTC 13928 29 96.6 32 ............................C ATACAGAAGTAACGGATAAAAAGCCGTTACGG 13989 29 96.6 32 ............................C CCATCAAGCGATTGAGTAAGATTGCTAATTTG 14050 29 96.6 32 ............................C TGTGGCGCGACGATGCACCCCATGACGCAGTG 14111 29 96.6 32 ............................C GATACAGCGATGATGGCTATAAGGCACTAGAA 14172 29 100.0 32 ............................. TAGGTCGCTCATACCAAGCAGATCGCACATTG 14233 29 100.0 32 ............................. ATATTCGCCTTAAGATGAAATGGCACGTAGCT 14294 29 96.6 32 ............................C AACAAGCGGCTTTATACAAGCAATCCTTACAT 14355 29 100.0 32 ............................. TAATGGAAAAAGATGGCGATCGAGATGGTGAC 14416 29 96.6 32 ............................C CCTCGCCCAAGTGTAGCAAACGTTTGAGCGTG 14477 29 100.0 32 ............................. TTCGTCCTCAATCGCGTCTAATGTGTCAACAA 14538 29 100.0 32 ............................. GAGAAGAACTAAACTTTCTATGAAGTTAGGAA 14599 29 100.0 32 ............................. CACAGCGGTGGCAGTAGCTACACTACCGATCA 14660 29 96.6 32 ............................C CGCAGCGTCCGACACGGCTTCGCTGACGGCCG 14721 29 100.0 32 ............................. GGCACGCATTACGAAACGTGGAATTGCAGAAG 14782 29 100.0 32 ............................. TATACAGCAGAAAAGAAGGAGGCTTGGAAATG 14843 29 100.0 32 ............................. AGTAGCTTGTAGGCCTTTGGAAAAGCTTTCAA 14904 29 100.0 32 ............................. GAAGCAAGCTACCGCCGGATTCGACCCGAAGA 14965 29 96.6 32 ............................C GCATCACGTGTGTTTGCATATCCGAGAATCTC 15026 29 96.6 32 ............................C TTGGAGGATAAAAATGAAGGTTAACAACTATG 15087 29 100.0 32 ............................. TCACTTGCGTACAAATGCCGAGCAACCATCTT 15148 29 96.6 32 ............................C GTGAATTCCGACATCGTAATTCTTACTATTAG 15209 29 100.0 32 ............................. TAATCATGACTAAGAACACTAACCACACCACT 15270 29 100.0 32 ............................. GTACCCGTTCCAGTCAACGTACTATCTGCTGA 15331 29 100.0 32 ............................. CTTCTCCTTTAATTCATCTAACTGTTTCTTTA 15392 29 96.6 32 ............................C TTAAAGCTCCAAGCCAAGGTCACCTCACTTAA 15453 29 96.6 32 ............................C AGATGGCCGAAGAAAGGGCACGGATTCCTAAA 15514 29 100.0 32 ............................. AATCATGGGAGCGCGTGAACGGTTTGAACAAG 15575 29 96.6 32 ............................C TGCGATTTGCCGTACAAGATTGCCCAGACGTG 15636 29 100.0 33 ............................. ATATCTTCTTCTGTTCTATTAGATGCTCTATTA 15698 29 96.6 32 ............................C ATAAAGCAAGCTAATCCCGTTATCTAGGCTGT 15759 29 96.6 32 ............................C AGCAGCAGTAATTGCCAACCTAATCTGCTGGG 15820 29 96.6 32 ............................C TGATAACCCAATTTTTGCCGATTACTACCTAG 15881 29 100.0 32 ............................. TAGATTCACATTTAAGCTGTGAAATCATTACA 15942 29 100.0 32 ............................. ATCCCTTGTCAGCATATTTCTGATAGATAACC 16003 29 100.0 32 ............................. TGGTTACCTTGGTCTCATCCCCAGTTGACGTA 16064 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 53 29 98.5 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACAGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAACAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCATGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAATGTTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TTTTTTGTGTGCCTGAAATGTCAATTTAAGTTAGAAAAAAAGTTGTCGTTGATCCTCTGTGATATGTTCCATAAATACCTCATAAGGTGTCCGATAGTCTAGTGACTTTCTTGGAATTCGATTCCGCTTACTCATGAGCTGGTTCACTAACTCATCTGGAAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 961-197 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAHK01000070.1 Limosilactobacillus fermentum strain DS13_7 DS13_7_70_length_3420_cov_45.125114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 960 36 100.0 30 .................................... TACATTGATAACGTTTTAGTTTGCTAACAA 894 36 100.0 30 .................................... AATGATTGAAGCTTACAGTAAGCTGGAACT 828 36 100.0 30 .................................... CACGGCTAAGCTAGCGGTACAATCTGCTTA 762 36 100.0 30 .................................... GACGCTAGACCGGCTTAACGAGGTAATGAA 696 36 100.0 30 .................................... ATTTGCTAGATGAGTATTTAGACCCCGAAC 630 36 100.0 30 .................................... AATCAATACCAGCAAGATCTGGAAGAGCTG 564 36 100.0 30 .................................... ACCAGTTGATCCGGGATGATCGCTTGTCCT 498 36 100.0 30 .................................... GACGGAGGATCAATTGATGAGGAAGGTAAC 432 36 100.0 30 .................................... GCTGGGATCTAGTGTCCCAGATCGATGAAC 366 36 100.0 30 .................................... CATAGTATCACCATAAACCTTTGCCTTACC 300 36 100.0 30 .................................... CGCTGGCTTATCGATGACTGAGCATGGTAG 234 36 80.6 0 .........................AG...A.AATG | C,G [205,207] ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.4 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAGCTTGATAGTTACCAAACGGCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCGAGATCGGATGAATAACCTTGCTCGAGAGGTGTACTCAGAGATGCAAGATTCTTTGTTCGAATTTGACTTGCCATTGGAGGTGCGGTATGACGAAAGTCTTTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACCCAAACAGGATATTTATCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGAGAAAACAAAG # Right flank : GTTGGTGTAAATTAAATTCCGCGAATTTATCATTTCACAAGCTTAAGCATACCGGCTTCTTCTGAATTGCCATCTTTTTCAATCCCGTGGTAAACGGTCATGTTTAAGTACCGTGGACCAGCAGCCCATTTTTCATTCTGTTCAATCAGTAGTGCTCCCATTAGTCGCAAGACGCTTAGATCATTCGGGAATATCCG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //