Array 1 27-727 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTJ01000131.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4348 NODE_131_length_12592_cov_1.33539, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 88 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 149 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 210 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 271 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 332 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 393 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 454 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 515 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 576 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 637 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 698 29 100.0 0 ............................. | A [725] ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGCGTCTAATTCTCATTAATTAAAAG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7418-6232 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTJ01000061.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4348 NODE_61_length_24356_cov_1.37426, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7417 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 7356 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 7295 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 7234 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 7173 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 7112 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 7051 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 6990 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 6929 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 6868 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 6807 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 6746 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 6685 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 6624 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 6563 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 6502 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 6441 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 6380 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 6319 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6259 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10382-11264 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTJ01000159.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4348 NODE_159_length_11315_cov_1.52663, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10382 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 10443 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 10504 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 10565 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 10626 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 10687 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 10748 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 10809 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 10870 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 10931 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 10992 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 11053 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 11114 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 11175 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 11236 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : ACAATGTTGCGTCTAATTCTCATTAATTAAAAGTGTTCCCCGCGCCAGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //