Array 1 361764-363378 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPG01000086.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain ABBSB1205-1 NODE_215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 361764 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 361825 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 361886 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 361947 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 362008 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 362069 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 362130 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 362191 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 362252 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 362313 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 362374 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362435 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362496 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362557 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362618 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 362679 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 362740 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 362801 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 362863 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 362924 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 362985 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 363046 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 363107 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 363168 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 363229 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 363290 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 363351 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 379650-381126 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPG01000086.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain ABBSB1205-1 NODE_215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 379650 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 379711 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 379773 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 379834 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 379895 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 379956 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 380017 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 380078 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380139 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 380200 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 380261 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 380322 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 380383 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 380445 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 380548 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 380609 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 380670 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 380731 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 380792 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 380853 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 380914 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 380975 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 381036 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 381097 29 96.6 0 A............................ | A [381123] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //