Array 1 1848797-1850474 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJQ01000005.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL05735 2014LSAL05735_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1848797 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1848858 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1848919 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1848980 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1849041 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1849102 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1849163 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1849224 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1849285 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1849346 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1849407 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1849468 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1849529 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1849591 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1849652 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1849713 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1849774 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1849835 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1849897 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1849958 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1850019 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1850081 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1850142 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1850203 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1850264 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1850325 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1850386 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1850447 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1866733-1868714 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJQ01000005.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL05735 2014LSAL05735_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1866733 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1866794 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1866855 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1866916 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1866977 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1867038 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1867099 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1867160 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1867221 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1867282 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1867343 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1867404 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1867465 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1867526 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1867587 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1867648 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1867709 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1867770 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1867831 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1867892 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1867953 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1868014 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1868075 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1868136 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1868197 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1868258 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1868319 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1868380 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1868441 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1868502 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1868563 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1868624 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1868685 29 96.6 0 A............................ | A [1868711] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //