Array 1 54901-55172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERWJ010000011.1 Bifidobacterium longum subsp. longum strain 3B Contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54901 28 100.0 33 ............................ TCAAACAGGCTCTCGGATACTGAGAGCTGAGAC 54962 28 100.0 33 ............................ TGGCGTCGTGTTATGGCTATGCACGTTTGTGCT 55023 28 100.0 33 ............................ CATTGGCGATGGGGTTGTTCGCGGCTTGGCGAA 55084 28 92.9 33 ............CA.............. GAAAGCGCCATTCGAGGATCTCGATGTCCATAA 55145 28 89.3 0 .T..........CA.............. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 96.4 33 ACCTACCCCGCAGGCGCGGGGATAAACC # Left flank : TCGGATCCGAAAGCATCCAAATGGTCGTTGAACGGCATGGACTACCGCGGGTACGCGAAACCCACGCGCATGGAACAAGCCTCATGGTACGCATTCGGCCTATACGCCTACCACCAGCAAGGCAACCAATACAAACCCATGTACAAGGAAGGCGAACGCTTCAACAAAGCATTACGGATATTGGCGGATACCGGCGAAGACGTTGACGAACTTTACCGGAAACTGTTGAACACCCACAATATGCAGGAAGCCGCACCATTCTGTCTGAGAATAATCCGACTGTTGAACGAGCACGACATTCCACTGGACCACGCCCTGCTGGCATTGGACTTGGCCAGACTCAACAAACCGGACTCCGCAGACATGGTGCGACGCGACTGGAGCCGACTGCTCGACTGATTGTCCACCAGATTGACAGCACTGGACAATCGGCTCAGAAAATAGGAACAAATTTGCATAATAGACCCATGCATGGTCTCGAAAACGTTGAAAACTAAACT # Right flank : CCCTGTGAGCCACTTTTATTGACATCTGACTTTTCTCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAAACCATGAACACCAACACCCTTGAGCAGTCCCAAGACACCACCGCCATCGAGACAATCCGCGAACAGCTCAAAGCGAAGAAACGCGGGCAAGCAGTCCGCGAACTCGCCACCCCACTGCTTCAAGCATGGACAAACGCCATCGAAGGCAACAATCCCAATCTTGACAATCTCACCGGTCTACCCGAGCTCATGTCCGAAGTAATCAGCGTCAGGGACGCGGCAATCATCGCCACCATCGACCCTCAGCTGACCATGAGTACCATCATCGACATCGCCGCAAACCCGCACTCCCCGTACTCGAAGAAAGTGCTCGAGCAGACACTGCGAGATGGGTTCGATAATCCTGATGCCAAGCCAGACCATGAAAGGCTTGTAAAAGCGGTTGAAATCGCCCGCAATCTTACCAACCTCGTTTCCGAGGAAA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCAGGCGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 59688-60325 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERWJ010000011.1 Bifidobacterium longum subsp. longum strain 3B Contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 59688 28 100.0 33 ............................ ATCTGGGAATCGCTGACCACCGATCTTTACAGC 59749 28 100.0 33 ............................ CCACGGCCCCGAAATCGTGCTGCCTCCGATGAC 59810 28 100.0 33 ............................ GCCCCTGCGCTCCGGCATGTCCAACGCCTTGGT 59871 28 100.0 33 ............................ GAGGATGAACGGGATATCTCCACAGATTGCTAT 59932 28 100.0 33 ............................ GGAGGTACTCACAATGGCCGACGAAATGAAGGA 59993 28 100.0 33 ............................ GGCGTACCCCGGCTGGATCCCCTCGCATCGGAT 60054 28 96.4 33 ..............T............. GGCGGTGCGCTCAAGAAGCAGTCCGATCGTTGC 60115 27 96.4 33 .................-.......... GGTGATGAGTGCGTCCATTTGTCCTCCTTGTGG 60175 28 100.0 33 ............................ GCGCCGGGGCGGCCCTGCGACATATCGACGATT 60236 28 96.4 33 ..............T............. CACCTCGGCATCATACAAAAAGAGTGGCCCCGC 60297 28 71.4 0 ...........G..T......G.GGTTT | C [60302] ========== ====== ====== ====== ============================ ================================= ================== 11 28 96.4 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : CCGAAACAGGACCCCAACCATAAAGGACGCTACCTGCGCAACGGCTCGGCGGCCAAAGCGGGATTGAACCGCAGCATCCTCAACAACCGTTGGACGGACATCCAGAACAAACTCGAATACAAGACCCGTCTCGCCGGAACCCAGCTCATACTGGTCAACCCGGCGTACACGTCCCAGACCTGCAACCGTTGCGGCCATGTCGCAAAGGAGAACCGTGAGAGCCAAGCGGTCTTCCAATGCGTCAACTGCGGTTTTAAGGACAATGCGGACATCAACGCGGCCAAGAACATCCTCGACCGCGCGATACACACAACCGGCATGGACGATGCCGAGGGCGTGGAGGAACACGCTTCCCGTGAAACCTGTGTTTCACGGGAAGGTTCCATTGAAACGCCAACCCCTGCCACGCGTACGGGAAGACCCCTCCAATGAGGAACGTGTCTCATACGCGACAGGAATCCCCCCGGCTTCAGCCGTGGGGAGGAAGTCAAAATGCAAGT # Right flank : TCTTAAAATGTTTTCCCATTTGCCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGTGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGGAGTGGGGGGCAAAAATGAATCATCCAGACCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCACTCCAGCCGACCTACTCAGCTTCTACAAGCATGAGCATTACACGGAAGCCCTGAAACATTGGACGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTAATCGACAACGGTGTCCGCATGGGATCGGTCCTGTCCGCCGTTTTCGAGGGTGCTCATTTGGAC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : ATCTACCCCGCACATGCGGGGATAAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //