Array 1 270-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFNT010000411.1 Myxococcus xanthus strain AM005 NODE_411_length_286_cov_35.1447, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 269 37 100.0 35 ..................................... GCGGCGGACAGCGACTCCGCCACGGACTGCACGCC 197 37 100.0 33 ..................................... ATCCGCGTCGCGCGGATCTCGAATCCATGCACC 127 37 100.0 33 ..................................... CGAACGGGCAAGGCGCCGAAGAAGAAGCGGAGT 57 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 100.0 34 GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Left flank : CGAAGAAGAAGCGGAG # Right flank : CGCGGCGGACAGCGACTCCGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [6.7-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 20409-14533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFNT010000009.1 Myxococcus xanthus strain AM005 NODE_9_length_113574_cov_44.0246, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 20408 37 100.0 33 ..................................... GCCAAAGAATCATTTTTGACGAGGACACGGAGA 20338 37 100.0 33 ..................................... CATACGCAGAATAAAAGAAAGTACAGCATTTAC 20268 37 100.0 34 ..................................... CACCCTGTCCCGTTGGCTTTTACGGATGCTACCA 20197 37 100.0 34 ..................................... ATTTTCCGCAGGTGGGACAAGCTCTGCCTAAAAG 20126 37 100.0 33 ..................................... GCCACGCCCAGTGCCTCGGACAGCGTGGCCTTG 20056 37 100.0 37 ..................................... CATCAACGAGTTCAAGTGGATGGTGGAGCAGCTCCAC 19982 37 100.0 35 ..................................... CTCGACTTCGAGACGACGGGCCTGGACCCGGCCAC 19910 37 100.0 33 ..................................... CGGTTGCTTCGCGAGATGGAGGCGCTGTGCCAT 19840 37 100.0 33 ..................................... GGCAACAACCTGTCCATCGGGATAAGGGCTGCC 19770 37 100.0 35 ..................................... GAGGCTGCCGGTGACCACGAGATATTTGTGGGGAT 19698 37 100.0 33 ..................................... CTGAGCACGAGCGCAGCATGAGCATCCCAAGCC 19628 37 100.0 34 ..................................... CTTTCCGCAATGCAAGCCAAAGCTGAATATGACG 19557 37 100.0 35 ..................................... CAGGTGGGCGACGTGGAGCGCTTCACGGCGGACTG 19485 37 100.0 36 ..................................... AACCTCATCGCGTCCGAACTCGGCCTGCGCAGCCGG 19412 37 100.0 33 ..................................... CTTTCGTGCGACCCCGCGTTGGGGGCCAGGGGT 19342 37 100.0 35 ..................................... TCCAACCGGCGCAGTCGCTTGGCAACGGCGCCCAA 19270 37 100.0 32 ..................................... CTCCCGCTCCGCGTAGTCCAGGAGCTGCCGGG 19201 37 100.0 36 ..................................... CACCGGCTCTGGTGGACTCGACTGGCTACTCCTCAC 19128 37 97.3 34 ...T................................. GTCAGCACCCAGCAGTCCAAGGAGCAGACCCGAT 19057 37 100.0 32 ..................................... CACTCGCGCTGTGACGTGCCGCAGGTGGCGGG 18988 37 100.0 35 ..................................... CGTCTCTGCCTGCGTCATGGCTACCCCCTGTGGCT 18916 37 100.0 33 ..................................... CAGTCCAAGGAGAGCATCCGGCCCAGAGAGCCC 18846 37 100.0 32 ..................................... CGGGGCGCAGCGGAGCAGGAATCGCAGGCCTC 18777 37 100.0 34 ..................................... GAATCGTCACCGTCTCGTAGTTCTTGGCCAACCT 18706 37 100.0 36 ..................................... GAGAGCTGGATTGCGCTGCGCAGCAGCAGGAGGACC 18633 37 100.0 34 ..................................... AAGCTGCGTGGCAACGTCATGCCTGTGAGCTCCA 18562 37 100.0 32 ..................................... ATCGAATCGCAGTTGATGAAGGTCGAGAAGAA 18493 37 100.0 37 ..................................... CAAGGGCGTTGCCCGACTCCTGACGCGCGCAGAACAG 18419 37 100.0 33 ..................................... TGCGTCGACGGCATCCTGCACGACGTGTCCGAG 18349 37 100.0 33 ..................................... GAGTCACCCGTTTCCGGGGTGAACGCAACCGCC 18279 37 100.0 35 ..................................... ACCCAGCAGGCACGACTCGTTCGGGCCGAGGCAGC 18207 37 100.0 33 ..................................... CGCGAGCAGGCGGCGCGTGAGTGGCTCATCCGC 18137 37 100.0 36 ..................................... AAGAAGGCGGAGAGGAAGAACGCGAAGCTGCGGCTC 18064 37 100.0 34 ..................................... CTGGGCAAGGACATGGTGCAGGCCACGGCTACCC 17993 37 100.0 35 ..................................... TGGTTGGACACCCTCTCCATGTCCCGCGCCATCCA 17921 37 100.0 33 ..................................... AGCATCCCCGCCGCTGAGCACTCGACCATCACG 17851 37 100.0 36 ..................................... TCAAGCACCTCCGGAATGTCGCCAAGGTCAACGGTC 17778 37 100.0 36 ..................................... GGCGGTAAGGCCATCACTGGCCTCGACGCCGCGGTG 17705 37 100.0 34 ..................................... GAACGTGATTACGTACTCGTCCGCCCTCGACCAG 17634 37 100.0 33 ..................................... TACTTGGCCGCCCAGTGTTCTCTCAGGTTGGCC 17564 37 100.0 36 ..................................... GACAATGACGCCGCCGCTGCGGTGCGCAGCAACCGG 17491 37 100.0 33 ..................................... CAGGTGTTTCTGGGGCCACGCCCCGGCGAGGAG 17421 37 100.0 33 ..................................... CGCCACGGCTCACCCCTCGGTTTGCAGGCCCGA 17351 37 100.0 32 ..................................... ACGCCACGCGCGGCCGGCTGGACTGGCGCGCC 17282 37 100.0 36 ..................................... CACCCGGAAGGTGTCGCCGGAATAGACCGGCACCCG 17209 37 100.0 36 ..................................... GCACAGTCGCCTCTGGATGTCGAGGGACTCCGCCGC 17136 37 100.0 34 ..................................... CAGTAGGCGCGCTGCCGAGCGTTGTCGCAGTCGT 17065 37 100.0 36 ..................................... CTCGATACGCTTGGACGAATTGGGCGGGCTGTTGCT 16992 37 100.0 37 ..................................... GTGAAGGGCTCCGGTCAGCCGCGTCTGCTCCTTGAGC 16918 37 100.0 33 ..................................... ATGAAGGAGTGGTACGCCTGCCGGCTGGAGCGT 16848 37 100.0 35 ..................................... AGCAGCGGCGACGCCAACGAAATGACCCGGGCGCC 16776 37 100.0 33 ..................................... CGGAGCAGGACCTCTATGCGTTTCCGCATTCCA 16706 37 100.0 36 ..................................... GGCAGTTATCTTGTCCATGTTGCCCCCGGCACTAGT 16633 37 100.0 36 ..................................... GCTCACGCCCGGCGCCGGACTTGAGCACCCCCAGTC 16560 37 100.0 36 ..................................... CAATCCGGTTCCGCGCGCTCCGTCCACGTCGCCGTC 16487 37 100.0 36 ..................................... GTCGGAACGCACCGTCTCGTTGATGGCTTTGCGGAT 16414 37 100.0 32 ..................................... ACCCGTGAGTGCGACAAGGCAGCGGAGGCCAA 16345 37 100.0 37 ..................................... CCAGACGGCGGCACCGTAGTGCTCTACGAGGTACGCG 16271 37 100.0 33 ..................................... GCCGCTAACCTCTCCCTGCCCCACATATCCGGA 16201 37 100.0 33 ..................................... TTGTAGATGAGATACGCCGCCGCGGCGAACGCA 16131 37 100.0 34 ..................................... GGCTTCACGGACGCGCAGCTCTATGGCCCCAGCG 16060 37 100.0 35 ..................................... TCGCTGGAGGACCCGGAGATTTGGCTGCCGAAGCG 15988 37 100.0 34 ..................................... TGTATGCGGCCGGCTCGGTGGTTGCTGCCGGCGT 15917 37 100.0 33 ..................................... TGGGAAAACGTCGGCGGAGCAACTAGCGCTCTT 15847 37 100.0 34 ..................................... ATCCTCGCGCTGCAGTTGCGGAAGCTCGACGGCA 15776 37 100.0 34 ..................................... CCTCCCTCGCGCAGCCCTGGAAACCGCCTGCGTC 15705 37 100.0 34 ..................................... CGGGACGGCGTGGGGTGACTTCCAGGCTCTGACG 15634 37 100.0 34 ..................................... GAGTTGAAGGAGCCGAAGCGATGACGACGAAGAA 15563 37 100.0 33 ..................................... CGAACGGGCAAGGCGCCGAAGAAGAAGCGGAGT 15493 37 100.0 35 ..................................... GCGGCGGACAGCGACTCCGCCACGGACTGCACGCC 15421 37 100.0 32 ..................................... ACGATGGTTGGAGTGGATGCGCCAGGGATGAC 15352 37 100.0 34 ..................................... ATGGGAGTGCTCCTGGGGTGAGGCGAGAGCCGGG 15281 37 100.0 34 ..................................... CGGCTTCCGGTTGGGCCCACCTTCCGCGAGCGAC 15210 37 100.0 32 ..................................... GCTGGTCCTGGAAGGTCGGGCACCCCGACTAC 15141 37 100.0 33 ..................................... ATCGTCGGGTGTGGCGGACGCGCAGGCCAGACA 15071 37 100.0 35 ..................................... GCGCGATGGCCGAGGCAACGGCACTGCGCGCCTTG 14999 37 97.3 35 .........T........................... TCCGGGCTGGTGCTCGGGGCCGGGTGGCTCGCGCG 14927 37 97.3 36 ............A........................ GACATCTACGTCGACGACGTGGAAGGCGCTCAATGA 14854 37 94.6 35 ........G..........A................. GTCGGCAAGCGCGACGTGGGCCAGGACGAGCTGCC 14782 37 97.3 33 ........G............................ GCGCTGGAGCGGCTCCGCCACACCTTCGTGACG 14712 37 94.6 33 ........G..........C................. CCGGAGCAAGACGGGGGGCAGGTTGCCGCGCAC 14642 37 97.3 36 ...................C................. CCGCAGTTGAAGCGCTACAGCCAGTTCGCCCCCGAC 14569 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 83 37 99.7 34 GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Left flank : TCCCTTCGCGATGCGCTGATGCGTAGATTGACCGTGCTGATCTGTTACGACGTGCGGGTGTCGGACCCACAGGGGCCTCGGCGCCTGCGCAAGATTGCGCGGGCTTGCAGAGACCATGGCGTGCGAGTGCAATACTCCGTCTTCGAGTGTGTCCTGGAGCCCAAGGACTGGGTCATCCTACGCGCCCGCCTGCTTGATGCGTTCGACTCGGAATGCGACAGCCTGCGCTTCTATTTCCTGTCGGAAGACGATGCCCGGAAGACGGAGCATCATGGCGCCAGGCCACCCTTGGACGTCGAGGGGCCGCTGGTCCTGTAGGGCTCCGCGAACCGGCCCCGGTGTGCGCTCCGTCGAGGGTTCGCGCTCATTGAAATCCCGAATAGAATCATGGAGTTGGGTGAGTGGGCGTCAGGAACGGCGAGGCGCTTTCGTGGCCCCGCGGGCCGGTTCGCGAAATGCGGCCGGATTCCGTAGTCAGAACGCTATGTTAGAGAGGCAGA # Right flank : GGTTCAGCTCACCGGTACTCTCCGTTGCTTCCACCGCGCTTGAGCGAAGGACTTTCGCCGCTGGAACATTCGGCACGGCGGCAGCAGCGGTTCTCCGCGGAGTCGCTCGTGCTCAGGCTCCAAGAGTCGCCGGGCATTCCCAATACACGGCACTTCTGGCTCGAGGTCTTCGGGGCTGGTCGTTCCAATCACGACGGCTCGTTCCTATCCGACGCGAACGTGGCCGCCGCCCATCGGCTCACGACGTTGCTCATCGCCGCGAGCTGGCTGGACGAATACAAGGAAGCTCGCAGCGCCCCTCCTCCCGTCGTACATGACCGGCAGGTGACAACGTCTGACTCCACCGTGGACGGTCGGCGCACGCGGCTGACGTTGGGCACCGACACGCCGCCCGACCTCCTCCGCTTCATGCAGCAGGTGGCTGCCGCTTACGGCATCGAACCTTGAGCGCGAGGACCCCGGGCGCCCCAGGGCTGGAGGAACACCGCCGTCTCCTCCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //