Array 1 535-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTSX02000011.1 Escherichia sp. MOD1-EC5451 MOD1-EC5451-20_11_length_134803_cov_70.815233, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 534 28 100.0 32 ............................ TTGCACCATTCTGGTGTTGCAAACGGTTTATT 474 28 100.0 32 ............................ AGAGACAATGCCGGACATACAGACACGGGAAC 414 28 100.0 32 ............................ GAGATGTTCCCCTGGCGGCACCCGGTTTTATA 354 28 100.0 32 ............................ TGGTGAAAAACTTTCCCCTCGGCCTGCCAGTA 294 28 100.0 32 ............................ TTGACCGTGCGCGGGTTCAGAACGCCGTCGTC 234 28 100.0 32 ............................ ACACGCAGGAAGAGATCCGCGAGGCTATCAAC 174 28 100.0 32 ............................ CTGCGCAACATCCACGCCGCGCCCGGTGATGG 114 28 100.0 32 ............................ ACGAGGTGACCTGGAATAACGCCGCAGTAAAA 54 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCTGGGGTCGTGAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCTCGTAAGAGGTTACGGATTTTTTTGTTTGTGAGGTGGGGCGGTAAAAACCCTATTTTTGAGGGCGAAGGTAATTTATTGATAATTAATGCTGCTGGAAGGCAAGGATAAAAAAGGGGCTGGACAAGGAATTTTGCTGGTTTCGCTTTATTAACAATGGGCTAAGCGTGTAGTATTTGA # Right flank : ATTGACCGTGCGCGGGTTCAGAACGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32305-31076 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTSX02000034.1 Escherichia sp. MOD1-EC5451 MOD1-EC5451-20_34_length_47222_cov_70.228740, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32304 28 100.0 32 ............................ TCGCAGGGCTTGCGGGAGAAGGCAGTGAATTA 32244 28 100.0 32 ............................ CATAATAACACCAAATATTTTACTGTTTAAAT 32184 28 100.0 32 ............................ AGCACCGTCAACCTCACCCACCCACGAAATAT 32124 28 100.0 32 ............................ GCAAAGGGTTTTCGACCATTACCCAGATAATT 32064 28 100.0 32 ............................ GGAGACGATATCCGTAGCCGCAGACACAGCAG 32004 28 100.0 32 ............................ GATGTGGTGAGAAAGTTGCTCCGCCAGAGTGT 31944 28 100.0 32 ............................ TAATCTCACTGCTACTGTGCCAGCAACTGGCG 31884 28 100.0 32 ............................ GAAAGTGCCTTGGCGCTGGCGGTAAATTTCGT 31824 28 100.0 32 ............................ AGAGGGCGCGGTCGCGCCCTTAAGGTCAAAAG 31764 28 100.0 32 ............................ CTGGGTTATCTCCACGCTCGCCCGGTTAACTA 31704 28 100.0 32 ............................ TGAAAATAACTTCTGATATTGTTGGCGATGGT 31644 28 100.0 32 ............................ TTGGGCCATTGCGATAGACGCTGCCGGTATTG 31584 28 100.0 32 ............................ GCAATAAACCGTTTGCAACACCAGAATGGTGC 31524 28 100.0 32 ............................ CGTAGGGACGCCGTAACCGCCGATTACATAGT 31464 28 100.0 32 ............................ TGTACCTGCGCTTGTTGCAGCGGGTGCTACGG 31404 28 100.0 32 ............................ ATAGTGCGCAACGTGCGGGAGTCCATACAGAT 31344 28 100.0 32 ............................ CCCAGATAGTTGATAACTTCGTCGCTGTCAGC 31284 28 100.0 33 ............................ CCAGCCAGCATGATTCCGCGCGTTAATGTTGGA 31223 28 100.0 32 ............................ TGACGTAATAAATGCAATGCAAATGCTCGCTT 31163 28 96.4 32 ...........C................ TCGCTCCGCCAGTGCAACTGGTAGTAGAGTGC 31103 28 89.3 0 ....................T..TT... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACATGCTGTTTGCGTGACGGAGATTATGACCGTATGTGTTCTGTTTAATTGTTTATCAAAAACTATGCAGAAAATATGAGATTGAAGAAGTAACAAATCGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGGTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ATCCATACCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAAAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47221-46593 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTSX02000034.1 Escherichia sp. MOD1-EC5451 MOD1-EC5451-20_34_length_47222_cov_70.228740, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47220 27 96.4 32 -........................... TTGACCGTGCGCGGGTTCAGAACGCCGTCGTC 47161 28 100.0 32 ............................ GCAGTCGCAGCGGCAGAGTAATTGCGCGTTTC 47101 28 100.0 32 ............................ ACTACCAGCGCGGACGGATTGTTATGTGAATA 47041 28 100.0 32 ............................ ATGAATATCAGTGCGCTCGCGAGGAGCGTAAA 46981 28 100.0 32 ............................ AGTTCAGGCGCACGTTTGCTGTACTCATTAAG 46921 28 100.0 32 ............................ AGCAGTTCAATCGCTGGCTCAGGCGTCTGAAT 46861 28 96.4 32 ................A........... AGGAGCATTTGCGGCAAGGCCTGGTTGTTGCT 46801 28 100.0 32 ............................ ACGACGCTGTCGCGCTGGCGTCGGCGTGGAAC 46741 28 100.0 32 ............................ AAAGTTAAAATCATAACTCAGGTTTTGAGGGA 46681 28 100.0 32 ............................ AGCATCTGCATGGTGCCCGTGGTCTTAACAAG 46621 28 89.3 0 ..C.................T...C... | C [46597] ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTTGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //