Array 1 163232-162894 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNY01000092.1 Lactiplantibacillus pentosus strain IG5 NODE_176_length_385447_cov_66.325287, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163231 29 96.6 32 ............................C TTCTGGGCGGCGCTCGGAGTAGAGGCTGTCTG 163170 29 100.0 32 ............................. CAACAATTTGGAGAAAATTCAAAGCTGGAAAG 163109 29 100.0 32 ............................. ACAGTCGCCGTTAAAACTAGTCTGCCTAATGG GT [163098] 163046 29 100.0 33 ............................. ATTTCGAAGGCTAAGGGCGGTGGCTACGATTTT 162984 29 100.0 32 ............................. TCTGAATGCTCTGCTCGGTTTAGATAAATTTT 162923 29 82.8 0 ..T..T.....A..A.....A........ | T [162897] ========== ====== ====== ====== ============================= ================================= ================== 6 29 96.6 32 CTATTCCCCGTGTATACGGGGGTGATCCT # Left flank : ATTGTAGCAAGAACCCCGAAACCTCAGCTCAAAAAAATCATCCTCATACATCGAGAGAATGATTTTTTCAACGACGATGTTAATTGGGGGCCAGATGCCCCAATCCCTCTTCAAAAATCACCAAAGGAACGTCTGCCCAGGAATAGACATTCCCAAAGTTACTATTCCATCATACTTTCGGAATCACTACACCTTTGCTGGACTGCATTCACTTCAAGTTACACCGCCCAGACACTACAGCCTACCTTAACGAACAACATTATATGGTTGATTAGATGCTATTATTATTTTGCGGCATATGACATCTCACGTGGCGATTATCAAATTTACTATCTAGACACGCCATTTTTCACTCTGTACTTTTACTACTGCGTCCTGATGGTAAACTATTGATTTTATTTGGATCATACCTTATAGTCAAAGCACTAGCCATTTGACAAGTTGACCCTAAACAGTCATTTTCATATTTTAGATTGTTGATTTACCGGCATTTGTTTAGT # Right flank : AAACTCAATGGTTCCTCAACGACTGCCACGTTCTCCGCACATGTAGTATTCCACCCGATCCAGTGCCATTGTTCAATACCAAATATTTTGTTCAAAAAAAGACCGCCACCCCACAGGATGACGGTCTTTCAACATTAGAGCAACGCCCTAATTAAGTTTTAAATTAAGCAAGTGCCTTTTTAGCAGTGTCAACTAATGCCTTGAATGCATCCGCATCGTTAACGGCTAAGTCAGCTAACATTTTACGGTTAACGTCAACGTTAGCAACCTTTAAACCGTGCATTAATTGGCTGTAGCTGATGTCGTTGATCCGGGCTGCGGCGTTGATCCGGGCAATCCAAAGACGACGGAAGTCACTCTTACGCCGGCGACGATCGCGGAAAGCGTATTGGTATGACTTCATTACTTGGTCCTTAGCAACCTTAAATTGGATGTGCTTAGCACCACGGTAACCTTTAGCTAATTTTAAAATCCGTTTGCGACGTTTGCGTGTTACAGTT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATACGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 173185-173580 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNY01000092.1 Lactiplantibacillus pentosus strain IG5 NODE_176_length_385447_cov_66.325287, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 173185 29 100.0 32 ............................. ATAAATCGAACTAGTATTAACTTTTGTAACAT 173246 29 100.0 32 ............................. GCGAGTGAATGATGTGAAATTTTTGGGGAACT 173307 29 100.0 33 ............................. CACGGCGTCCGACCTCATTATTGGCTAATTTCA 173369 29 93.1 32 ...C........................T AACTGGTGGACTGACAAATACAAGCTATAAAA 173430 29 96.6 32 .......................A..... ACTAGCTGCCTTAAAGACTACGTTGACTTGGT 173491 29 79.3 32 ...C......C....G..A.A.......T GTTTTACGCCCAAGGAAGTGATGAATCGGTTT 173552 29 69.0 0 .........AC.C..G.AAT.A......A | ========== ====== ====== ====== ============================= ================================= ================== 7 29 91.1 32 GTATTCCCCGTGTATACGGGGGTGATCCC # Left flank : GCTTTCGACTTACTGCCAACCCCACCCATTCAATTATCGATCCTGAGCATCCAAAGGGACGGGTTGTGCCACATGTGACCATTGAACAACAGAAAAAATGGCTAGAAGACCGTGCGACTCGAGCTGGATTTGAGTTGATTCGTCGTAGCAATGTAGAATCTGATACAATTCACAAGTTAGCATTCGATGTTGTAAGCCATGATTGGCCAGTGCTTCACCACCATACAGAAAATAGTGTTCGCATGAGCCGTGTTACGTTTGAAGGACTCTTACGCGTCAAAGACGTAACGGCCCTCAAGCGAACCTTGACGATGGGGATTGGCCGTGAAAGAGCATTTGGTATGGGCTTAATGACGGTTATTCCTGAAGCATAATGATTAGGATAGGCTCGAGTTGGTGAGTCGTGGGTACGATATGATGCTGACTGTGTTAGAAACCAAGTTAACTAAAAACTGCCACGTGGTGTTTTCAGAAAGGCTTAGAGACGGGATTTATTAAGT # Right flank : AATAATACCGTATCCCACACTGATGAGGCCACACATCATAACTGAGGCCGATTTTCACATTTATCACAGCCTAAAAAGCGAGCCCCCAACCAAGGGACTCGCTTTTCTATCACTCATAATACTATTCCGTATGATGTTTCCGAACCGGGCTGACCCAAGTTCCGCTACCGTAACCAAGAATCGTTTTAACGGCTGGGATCAGTGTTGTAACGAGGGCGAGTGCGTTGACTTGCCAGTAGATCAGCATGTATAGCGGCATGAAAATCAAGTATTTGAATTTACGACCGCGGTCATCGACAATCAGGGCTGACAGTAGCTGCAAGACACCAGCAAACATCTCGAAGGTGACGAAGATGAAGGCCATGCAGAACATGTGGTAAACCCGTTCGTAGTTGCCCGTAAAGAAGAAGGTGACCAGTGAAATTAAGAAAATCAGTGTTGAGACAAAGAAGAATAGGGACCAGATAATACTCAAGGTTTGGTCAGTAATGAACGCCCAT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGTGTATACGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 322663-322163 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNY01000065.1 Lactiplantibacillus pentosus strain IG5 NODE_82_length_600493_cov_83.512764, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 322662 36 100.0 30 .................................... GTCACGACTATGACAACGAAAGACACGCTG 322596 36 100.0 30 .................................... TGATCTATAACCGTTACCAGAGTAGTCAGG 322530 36 100.0 30 .................................... AGGCCTATTCTGCATACATTGACCGATTCA 322464 36 100.0 30 .................................... TCTGGCTTGATCTCATAGTCAAAGTTGCAG 322398 36 97.2 30 ..................................T. AATGCGGTCAGTTTGTTGCCGGAGGTAGTA 322332 36 100.0 30 .................................... TACCAGACAAAAAGCTACAGCAGATTATGA 322266 36 97.2 30 .............................T...... GTGCACGTGGGTCGTCGTCTGCGAACGGCC 322200 36 80.6 0 ................GG.........AC....GTT | AC [322174] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 96.9 30 GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Left flank : TCGAACCATTGAAGTTAATCAATATTTGACTAAGTTGGAACGACTGATTAGTGAGTCGTTAGCCGATGAAGATCGTAATCAGATTCATGATAGTTTGAGTAACTTATATTCAACTGTTCAACAACAACTTTTCTTAACGGACCTACCACTGGAGGTAACTTACGATTTCGATATGAAGCACTTATTGAAATTTGCAAAAATTCATTTCGATGAGAAGTGGCAGACTAATCCTTATGATATAATTGAGTCAGTCCTGAAGGTTCATCAAGAGTGCGGTATTGAATCATGCGTGGTGTTGACCAACGTTGCGCACTATTTGACCGTCTCAGAAATGCAAGAACTTAAAAATAGCGTGGCAATGACCGGACAATCATTGTTACTGCTGGAGTTCTGCGTGATGAATCAACGTGATTATTATGATGTTGGGACATTTAATTATATTGATGAGGACTTTGTTGATTGGTACTGATGAAATGTTAGATTTCGATTAGAAATTAACG # Right flank : AGTCTGCCACGTATGTTGTTACCATCGTTTAAAATATCATTATAGGTCGTTAACTATGTGAGGATTCTGATTTGTCGTAGTCAATTTAAAAAGAATCTGTATTTTGAGAATGAGAGCTCAGCTGTCATACTAAACATGCGAGCTTTTTACCACCGTCCACTAATCCACAATAATCTCCCGCACCCCACAAAACACAACATCCTGCCGATCACCAAACTGCCGCATGACCTCGCCGTGTGTCACGCAAGCGATACAATCATATGTTTGAGCGTACTTGCTCAGAGTTGTGAGCACTCGCGACTTAACTTCAGCGGCTGTCTCATAGTGCAGAGGACTGTCTGCAACTCGTTGGCCGGCATGTTGTCGATAAAGCTGATAGGCCACGCTGGCTTGTTCGTCAGTGTCAGTGCGTGAACCAGTGTTATCAGGTTGCCACTCGCGCAATCCGAGCTTAACTTTTAAAGGAATGTCGTTAAACCGCACGATTTCTAGTGCCGTCT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 96367-96883 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNY01000095.1 Lactiplantibacillus pentosus strain IG5 NODE_201_length_98129_cov_73.953461, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96367 28 100.0 33 ............................ TGGCAGCATCGTTAGTTGCTCCAATCGGTGAAG 96428 28 100.0 33 ............................ TACACGTTCACTCATATAAACTGCCCCTAACCT 96489 28 100.0 33 ............................ CTATCAACACACTTTTACTCAAATGAGCGAGTA 96550 28 96.4 33 ..........C................. TTAATGGTTGCTAGTCCGGTCGCGGACCGCATG 96611 28 100.0 33 ............................ CCTTCATCCAAGCAGCCACTTGACTGGCGGTAG 96672 28 96.4 33 ..........C................. TTACATCCGTTAAATTCATTCTTACTCACTCCA G [96689] 96734 28 89.3 33 .....T....C......A.......... TCAGCTTTGCGGCACATATGCAACATGTTTACG 96795 28 85.7 33 ...............A..A..A.T.... TGACATTTATTTCATTGCACAAGATTCGAGAAT 96856 28 82.1 0 .....T....C..G...A........T. | ========== ====== ====== ====== ============================ ================================= ================== 9 28 94.4 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TCGCCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGAATTTTTGGCTAAATTGCCACTGTTTGATGGAAATAACTCAGAATAATATAACTAGTAGTAGTGAACCGCGTCGCAGAAACAGATTTAACGGATGATTTTATAGTCATTTTTGGCTTTATCAGTATTGTATGACCATTTAGACCAGTCAATTATAAATTCGTTTATACGGCAATTTTGGGCCGAATTTGAGCGATTCGTTAAATCTTGAGAAGTAATCATTTTTCAATGGCAATGCTAATTCAACTAAAATAATAATCACTTCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCGACTAAGGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTAATGTAAAAACTCAATTTTACGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : CTAAGATGGAAAAAGTGCTTCATATCCTATAGTTGTTCCCCGGGCATGGGGGTAATCCCTAAAAGCCCGCGCTATTAACGAAAACATTACCGGCTCTGTTCCGATACTTCATAAAGATTCTATCAACTCCACTTGACGGGGAGCCCGATTACCCCTGGTCGCCTCACCTCTCACAGTCATTCGCAAACTCGGCGCAAGGTAATTTAGAATCCAGAGCAAAAAAACGCCATATCCGAAGATATGACGTTTTTTTAAGTATCGAAAGCTATTCAAGATAGCTTATTGATACCGGCGATCGGGGTCGAACCGATACTCCCTCAACGGGAACTGGATTTTGAGTCCAGCGCGTCTGCCAATTCCGCCACGCCGGCAAAATAAAATGGGTGAAACTTACTGATCAGGATTATAACCTTTTCAGGAAAGGCGGTAACCGGATTTGAACCGGTGATGAAGGTTTTGCAGACCTCTGCCTTACCACTTGGCTATACCGCCATCATTTA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //