Array 1 28902-30258 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLHP01000003.1 Lacticaseibacillus rhamnosus strain DPC 7102 NODE_3_length_284436_cov_57.3166, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28902 36 100.0 30 .................................... ATGACTGGTTGCCGGTAAGCGATGAGTTCA 28968 36 100.0 30 .................................... CATACTTGTATGAGCACTTTGACTTGTCAA 29034 36 100.0 30 .................................... ACCGTTTGTGTTGCATGAATATGATCACTA 29100 36 100.0 30 .................................... AATAATATTGTGCCAAAAGGTAGTATTCTA 29166 36 100.0 30 .................................... GCCGCTGTGCCATCACCAATACCCATATCT 29232 36 100.0 30 .................................... GAACAGCGTTTTTAGAGCCATTGTATACAT 29298 36 100.0 30 .................................... TCCAAGGGCATTCCAGATTGCAGAAGCCCC 29364 36 100.0 30 .................................... CGCCTTACGGGCGACAGCTAGGCCTATGGG 29430 36 100.0 30 .................................... AGATCGAGCATTACGGCTTGCAAGACTGCG 29496 36 100.0 30 .................................... ACAGTTGAGAAAAGAAAATACGCATTTAAA 29562 36 100.0 30 .................................... AAAAACACAAATGGCCGCTGCCACCTTATG 29628 36 100.0 30 .................................... AAAAAAGCCGCGGAACTTCTCGGGCTAGAC 29694 36 100.0 30 .................................... CACAGTGCCATTCCACAAACCCGACAGAAA 29760 36 100.0 30 .................................... TCAAACAAGCTTAAAGACATATCACACGGG 29826 36 100.0 30 .................................... CGAGCTTGCGGCCAATATCAAGCTATATGC 29892 36 100.0 30 .................................... GTGTGATCATCATTACCTCTCTGCCACTAA 29958 36 100.0 30 .................................... ATCGCATACTTCATGATGATTGATGCCAGT 30024 36 100.0 30 .................................... TTGTGGTGCCAAAACGGGTTGTTGTCGAGA 30090 36 97.2 30 ...................................G TTTCAGCAAATATGACGTCTAACATGCCTC 30156 36 94.4 30 ..................................AT ACTTGGAAAAGTTGCTATGCAGTTTGAATA 30222 35 83.3 0 .......................AA.C...-..T.A | AA [30243] ========== ====== ====== ====== ==================================== ============================== ================== 21 36 98.8 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAGCTGGATTTGGACAAGTTATTCCAACGCTTGATCATCAAGAAGGTAAGTCAATTGATAGAGGATCGGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTAAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTGAACAAGCTGTTAGATCAGGTTAAGGAAACATCGTTAGAATTACTTCTCATTGAATTTTCGGATGTCGAACGTAGAAAGTTTTTTGAGAGGTGCCAGTATATCTATATTGACAAAGATTTCATGGATAGCCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : AAACCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTATCAACAGGCGTTCAAATCCATTTACGACAAATATCAAGATCGGGAAACCAACCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAAGTTCAAACGGCATAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGTCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCTAAATTGGTACATTTGTATCGTAAAGTCGGCTTTCAGCAGCTGCCAGATCGGGAAACAACGATTAATGAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //