Array 1 81694-81187 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLUQ01000069.1 Providencia alcalifaciens strain wls1911 603, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 81693 28 100.0 32 ............................ TTTAGCGCCAGAAACTGGAGGGTCAAACCTCA 81633 28 100.0 32 ............................ TCAAAGAAGTTCTAGCAACAAACCAACCACAC 81573 28 100.0 32 ............................ AAAGACAAGTGCTGTCCTAGGTGTGAATGTAA 81513 28 100.0 32 ............................ AAGTTGATGAGAACGAAGCCTATCTGATTGGT 81453 28 100.0 32 ............................ TATGTGATTTAACCAAAGGATATAACCATTAC 81393 28 100.0 32 ............................ CAGAGAAATACGCACTGAAATTATTAAGCCTG 81333 28 100.0 32 ............................ GAAACAGTTTTAGGAAGTGACGCAAAAGTCAC 81273 28 89.3 31 .......A...C.....T.......... TTTTAGGTCAATAACGGAAGCATCGGTGCAT 81214 28 75.0 0 ..........CC..T..T....A.A.T. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTGAAATCGATTCAAGCGGTTCCCTCTAATGCTCGACCAGTGAGTTATCTTCGTCAGCAAGTCAAAGGCGCTGCACGTATTGAATCTGATATGCAGAAGAAAGCGGCACTTTGGGCTAAAAAATCAGGTCGAACACTGGGTGAATGCTTAGCGGATTTAGAGAAATCCCGCCCAACTAAGCGTAGTTTACTGCCTTTTATTTGGGTAGAAAGCTTGCATGGTAAGAGTGAGAAAAGGGGAAGTCGTCCATTCCCACTTTTTATTCAGTGTGTTGAAGCGGAACACGTCATTGAGGGGCGTTTTAATTGTTATGGGCTTAGCCAAGTCGTTGAACGTAATAAAATACTGACAACAGTCCCTCATTTTTGACCTTTGTTTTTTGCTCTTTAATAACAAGGCGTAAAATCAATAAGTTACAGTAGTCGGTGAAATAAAGGGTATTTTATTAAGAATGCCCTTAACTGATTGTTGTAACTTATTTTTTGTTTGATATTCTCTA # Right flank : TCGGTCTCATCTATTAACTTTTATTATTTATGCCGTTGGGTGATTTGTACTAAATTTGGCGGCTGTTATTCTACAAAATAACAGAATAGTGACTGTTGTAAGATAGCTTAGAAATGAACGATAGAACGGGTCTAGATTACTGCCATACAGGCAGCTTTACCGAAACCTGAACAATAGAATGGGTATAATACTGTGTTACCTGACGACAAACATCCTAGACCAACAGATTAATTGGAGCGCACCATGCAGTACGAAATTATGATTAAGATCCTGTGTATGACCTTAATCTTCAAAGTGACAAAATTATCGGGCTCACTCAAACCCACAAGTTAAATATCAGGGATAACTGCTCAAACGCTTGATGGATCAGGCGTTCTGTATAGCGTGGAAGGATAGAAATAATCAGACCTAACATGCTGATACCAATCGTTAATGTTAGGGGGAAACCGACCACAAACACAGATAGCTGAGGAGTCATTCGGTTAAGAATGCCGAGCGAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 91148-90400 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLUQ01000069.1 Providencia alcalifaciens strain wls1911 603, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 91147 28 100.0 32 ............................ ACAAAACGCCATGGTTTTCCCTTGACGTAAAC 91087 28 100.0 32 ............................ AGAATGAATCTTTGTTCGCCCATTTGAACATT 91027 28 100.0 32 ............................ GTTATGGGGATTCCCATATCGCTAATTTAATC 90967 28 96.4 32 .............A.............. TAACAATCACCGATGTAATGGCTTCGCTTGGT 90907 28 100.0 32 ............................ AACAAAACAACGGAATTGTAGATATGTGCAAA 90847 28 100.0 32 ............................ GAGCATGTTTAAGTTGACGTTAGAACGTGTAA 90787 28 100.0 32 ............................ TAGCCGAAATTATCTTGTAAAAGGGTTAATCA 90727 28 100.0 32 ............................ ATCAGCTGAATGACTTGGCGAACGCGGAAGTA 90667 28 96.4 32 .................T.......... AAAGTAACGTAGTGATACGTGATGATGGTTGC 90607 28 100.0 32 ............................ TCGATGAGGGCGACGATGATTTTGATAAATCC 90547 28 96.4 32 .............T.............. AAGTGCCTGCAATAAGGTGGTATCAAATGGCT 90487 28 96.4 32 ...............A............ ACTATCCATGTGAATGATTGCTCTTGTTCCGC 90427 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.6 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GCGGATACACGCACAATTCAGAACGAAACCCGTAAGACTGAGTTGTTACAGACTAACTGGACTGGTGCAACGACGGATTACTATAAAGAGAAGGCAATGTTCCAAGCTTCTCAAGATATTTTTAAAGATCTCAACAGTATGTCGTTATTTGGCGGACGTTGATTGATTTTTACCGCACCCTTTGGCAGTGGCATGTGTACAGGGTGCGGATTTTTCATTCTTCTCGTTATGTTCGTGCTATTTCTTCCTCGTTATTTTCTCGCCCTGTATATTTCTAAGCACCTTTATCTATAGGTTTATTTCTCTTTCACCATTGCTGAATTTCATTTTGTGCGTATGGTTTATTGTATCGATTTGATGATGTATTTGACCTTTATTTTTTGTTCTTTAAAAAATCGCCTGATAAACAACAGGTTATTGAACCACCTAAAATAAAGGGTATTTTCAGCCTTTTGGTGCTAACAGTCTGTTGTGATTTGTTTTATTCCTGATAATTTATA # Right flank : TCGTTAAGCCACTATTATTTTTCTTAAACTATTAACCACAAGTTTATAGAGGGGAAACTCATCAAGGTAGACATTACAAGGATTGCGAAGTGCCTCGCAAAATGAATCTTCAATTTTTTTAAAGCTTGTAATGTCATTGCTGAGAGACTTAAATGAAATAAATAATTCAAAAAAATTATAGTATTAAGCAAAGGAATATTGACATGGATGACTTTTCCTCATCAGATTTAAAAACTATTTTGCACTCAAAACGTGCCAACATGTATTACCTCGAGCATTGCCGCGTGATGCAAAAAGATGGGCGAGTTCTCTATTTTACGGAAGCGAAAAATGAAAACTTGTATTTCAATATTCCTATTGCGAACACCACCGTTTTACTTTTGGGAACGGGAACTTCGGTCACTCAAGCAGCAATGCGTATGTTATCGCAAGCGGGGGTATTAGTTGGCTTTTGTGGTGGCGGTGGAACACCGCTTTATATGGCAACAGAAATCGAATGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //