Array 1 373028-374039 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYC010000001.1 Listeria booriae strain FSL L7-0269 NODE_1_length_580494_cov_32.580145, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 373028 30 100.0 35 .............................. CAGTGATATAATAGCATCTACTGCATGATAGAAAG 373093 30 100.0 36 .............................. GCAAACAACAGCTAAAATACCATTACTTTTAGACCC 373159 30 100.0 35 .............................. ACAACAAAAAGAAACGATTGAACGGTATGTTGAGG 373224 30 100.0 34 .............................. CTGTCAGAAAGAAAAGATAAGATGGTTACTATAC 373288 30 100.0 35 .............................. AAGGATGATTTAGAAATAACATTTTCTAAAGTAAC 373353 30 100.0 36 .............................. ATCCTTCTCATTTTGCGTCATAGTCTGCCTCATCCC 373419 30 100.0 35 .............................. TATTGATTTTTGCCTTTGCCATATATGCTTCTTCG 373484 30 100.0 35 .............................. TCGCCTAGAACATACTGATTAACAGAAGAGCCAAT 373549 30 100.0 36 .............................. CCTAATAATGAAACTGTATATCGCCATAAAATTCAT 373615 30 100.0 36 .............................. AGACGACTCATTGCGCCTGCTACCGATTCGAACCCA 373681 30 100.0 36 .............................. ACTATACAATCAAGTATTGGGGAATGGCTGGAGTTG 373747 30 100.0 34 .............................. ATGTATATAGCTGTATCATTACCTTCTCATTACA 373811 30 100.0 37 .............................. CTGCAAAATCGTTAATAGGAACATCGGGATTGCAATA 373878 30 100.0 35 .............................. TAGCCGGACACAAATGGAATACCTACATTCCCAGC 373943 30 100.0 37 .............................. GATGTTACAGATGCAAAGACCAAGGATTCAATAGTAA 374010 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 99.8 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCGGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCCCTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGCTTTTCTTTGTGGGGAAAGAGGGGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATGAGGGGGCATCGACAGATTTTTGTAAAGCGTTGGTGCGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : TCAGACAGATGCGGCATGAGCGGAGTTTGACAGATTGTCTTTATCTAAATAATATGAATCCAGACTAGATTGCCCACAGATGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCAGAATTTGATGGCGGCAGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTTGCGCCTCAGATGGATGTGCTTATCACGATGGTTGGGTATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTAAGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 21608-21842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYC010000003.1 Listeria booriae strain FSL L7-0269 NODE_3_length_310157_cov_33.188671, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 21608 37 100.0 29 ..................................... TCTATATAAAGCATTATCCGAAGAAGAGT 21674 37 100.0 29 ..................................... AGGCGCATTAGATAAATTGAATACCGCTG 21740 37 100.0 29 ..................................... TATGGATGAATTTTTGATTCATGCGGTCC 21806 37 86.5 0 ...........................T.T...TA.T | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 96.6 29 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATCA # Left flank : ACTGTACAGATATCCCCATATCAAATATCTCCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATAATTTCTTTGCCTTGAAGTGTGATAGGTAACGCTTTGCTACCATCTTTCTTCAATAAACGCATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAGTCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGGCTGTCTCGTGAGTCGAGGAAGAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAATAGGATACATCATTGTTTTGCAAGTAAATACTGCTTCATTGACTACCGATTGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGCTACTAGCCTCCGATTAATTAGAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : TTTATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAGCGCCTTCACTATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTATCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATTACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATTTTTTGGTGATAAATAATTTAAATGCGCTATACGATTTCTGTCTTTTCTCTTAGAAACAAACAAGTTCTCCCCTACCATGAATTTATGAAGTTTTTCAATATGTTTTGGCCATGTTTTCCTGCGTATTTTTTTCCAATATTTTTCAGTAGTATTAATCCAGCTATCCACTCTTTCGGTA # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 25306-25802 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYC010000003.1 Listeria booriae strain FSL L7-0269 NODE_3_length_310157_cov_33.188671, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25306 36 97.2 30 ...........................C........ CGGCTATGAAGGACAACCTTACAGGTAGTA 25372 36 97.2 29 ...........................C........ TCTAAAACTGGTGAAGTATTAACAAGCGC 25437 36 100.0 30 .................................... CGAATACCACGACGCAATTGATGTAGGCGT 25503 36 100.0 29 .................................... ACAACTTAATGGTCTCGATGGTGGAGTTT 25568 36 100.0 30 .................................... TCAAACTCGCGCCCTCGACGCGGACAGCCC 25634 36 100.0 30 .................................... AAGGAAAGGGTGAGGCGTGATGTACGCAAT 25700 36 94.4 30 ................A.......A........... CGAGGAACACAGGAGGAATTTATGAAACAT 25766 36 86.1 0 ..........................G.AA..C..A | T [25791] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 96.9 30 GTTTTAGTCCTCTTTTGTTTTGAGGTATTCTAAATC # Left flank : GTAATACCGCTGACATTAATTCTATTATTTCTTTATTAATTGCTTTGTTGATTGCTATTTTACGTTTATCTTTTTCTTTTTTGTTGGGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACAATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATTCATTGGTAATTATACACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : ATCTATTTTACTTTCAACAGTTTAACTATACCAGATTATTAGTAACTCTGCATCTTCGCGTAATCACGCGTACTAAATAATAATTTCCCGTACTAAATCAACAAAAAAACACCATAAATCGCATCTTACAAAGCGATCTACAGTGTTTCCCGTTCTTTCTAAGCGGAGAAACGGGGATTCGAACCCCGGCGCGGCCGGAACCGCCTAACAGATTTCGAGTCTGTCCCCTTCAGCCGGACTTGGGTATTTCCCCAAAATGCAATGTTGTTGTGACAGGCCTAAATGGCTTGGCTTGAACAATTACAAGTTCCATTCTAATGCATTTTTTTCGAAAAATCCAGTTTTTTATTTAATACGCGTCATAAAAATCGCTGCGCATGTGGGGGATTACTTTTTCCCAAGCTTCGATGGTTATTTCACTGGCTTGGGCTTTTTCGTAGTAAACGAGGTCTCGTGGTCGCACAAAGCCCATCATCATTTGTCCTAAGCCTTGAATCGTA # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTATTCTAAATC # Alternate repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 45885-45061 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYC010000010.1 Listeria booriae strain FSL L7-0269 NODE_10_length_152783_cov_32.812064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 45884 30 100.0 36 .............................. CCAGTTACCCCAGTTAGGTTCTGTCCGCCGTTATTT 45818 30 100.0 36 .............................. CTACAGCATGACAACTAATAGACACATTAATGAATT 45752 30 100.0 37 .............................. GACACATGGGATGAATTCGTTGAAACATTTAAAGACG 45685 30 100.0 36 .............................. CCAAAATATGATTTTCCTGTGATACGTATAAAAGGA 45619 30 100.0 35 .............................. TTGGAAATTAAAGCTATTCCAAAAACAGGAGCACA 45554 30 100.0 36 .............................. ATATGAACCATCGGCAATTAGCAAGCAAGATTAGTT 45488 30 100.0 37 .............................. AAGCTAACATCAACATTAACGATAGTTCCCCCTTCTT 45421 30 100.0 37 .............................. ACTTCTTCCACCACTTTCAACATCTGATTACGAGGGT 45354 30 100.0 36 .............................. TGCGCTATAACGGAGCATGCACTATTTACCGTGAAA 45288 30 96.7 36 .............C................ ATATCCACTGCAGGTAAGAATCGCGACAACGAATGC 45222 30 93.3 36 .............C...............C TTCTTAGACAGTTCCATGAGCTTTTTCGTGCCATTA 45156 30 93.3 35 .............C.......G........ TATTGAAGGCAGGGTAGCCACGGATAGAAAAGTAC 45091 30 76.7 0 T...............G.G..TC.AA.... | C [45065] ========== ====== ====== ====== ============================== ===================================== ================== 13 30 96.9 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGTTTTGAAGTGTTGGATAAAGAACGCCTTGTTCAGAAAACAACATTCGGCGCGAATCTACAAGTCATAGCGAATTTTTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCATTGATTGTGCAAGACGGGAAGAACAAGATAATTTCTACAGACAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTCGTTATGTATTGGTACTAAAGAGGTTAGGCCTATTTTCGGAGTTTGGGTTGTAAGATTTGAGGGCGATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : AAGGCATTAGTAAAATGAATTGAATAATAAGAGGGTGAATATCCATTACTACTAAACAATGGATATCCACCCTCTATTCTATTGGCCTCTATGTTGAAAATTTTTAGCATGCAGTTAACAACAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATGTCGTAAGCAGTGATGTGTGCGCTATCTGTCGTATTAAGAATGACCGTTTTCGCATAATATTTAATAGCTGGTGCAGTAACAGGAATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAAAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGGGTAACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAGTGTGATATTGTCTGTATTTTTTAAAATCACTCGTTTCGCATAATACTTA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 50479-49133 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYC010000010.1 Listeria booriae strain FSL L7-0269 NODE_10_length_152783_cov_32.812064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 50478 30 100.0 36 .............................. CATTAAAGATGAAAAAGCAATAGTTTTAAGATAAAA 50412 30 100.0 36 .............................. ATCTTAACATTATTTTACTACATATCAGGGTTAGGT 50346 30 100.0 35 .............................. TAACTACCTGTGTGACCTAATAATTGACCTTTTTT 50281 30 100.0 35 .............................. TCCCCTTAAGTTTACCATATTTGCCTAACCCTGTC 50216 30 100.0 36 .............................. ACTTGATAAGCCAACTCGCTTTCAGGCAAAGCTTGA 50150 30 100.0 34 .............................. TGTCCTGCCATAAAGTCCTGCCGTACTACATTTA 50086 30 100.0 36 .............................. AATGATCATGTGCTAAAGAAAGTTTATCTGCTTCAC 50020 30 100.0 35 .............................. TTTTTTGATGTTACAAAATCTAACTTCTCAACTTC 49955 30 100.0 36 .............................. TCGTTTTCGTCACTACTTGCAAACACTCGAAACACC 49889 30 100.0 38 .............................. AAACTCGAAACAAAACCTGAAACAAATCCTAAACCAGA 49821 30 100.0 36 .............................. TTTATATTAAATGATGAAGTAACCCCAACGCTTTTG 49755 30 100.0 36 .............................. TCGCTCCTCTTTCCGCCCACATCTTGGCGTAGTCTA 49689 30 100.0 35 .............................. TGACGCTTCTGATAGCGATGAGGCGTTCAGTATCC 49624 30 100.0 36 .............................. TATGTATCCCTCTTTCTAAAATTAATTTTTGGTACA 49558 30 100.0 36 .............................. CTGCACGGCCTCCTTTATAATAAACTTCGCCTCTGA 49492 30 100.0 35 .............................. CGAAAACAATGTTTCATAATTTTTACGACGCACAA 49427 30 100.0 36 .............................. TTGTATAAGGCAAGTCCAAAAACTGAAAGGAAGTGA 49361 30 96.7 36 ....................T......... ACGTCTGCTATTTTAGTGTTAACATTTTTAGTGTAA 49295 30 93.3 36 .............C......T......... AGGCGTGTGTAACGTGATTGTTGAACTGAAAACAAG 49229 30 96.7 37 ....................T......... GTAGTACCGTCAAGGTTTTTAACAACAATAATTTCTA 49162 30 83.3 0 .............C......T...A...TC | ========== ====== ====== ====== ============================== ====================================== ================== 21 30 98.6 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCAGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTATTTTTGCTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGGAGGTGAAAAAAATAAGTAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGATGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCAAATAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCGTAGACAGACCTATCGGATTTAAAGATGACTGCGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCAATCGACGTATTTGAGGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATACCGTTATCGAGCTCCTTTAACAAATACAACGGCATAAACGCTCACCTTCTCACAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATATCCAGCCCATAAAAAAAGATATAAATACCAAAACTACGATAACC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 164022-163660 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYC010000004.1 Listeria booriae strain FSL L7-0269 NODE_4_length_271671_cov_33.017696, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 164021 30 100.0 37 .............................. TCTTCCCAAATCAATTTCTCCAAAAGCTTCATTTCTG 163954 30 100.0 36 .............................. ACTGAATATCTTATAAAGAAGAATGATTTATATTTT 163888 30 100.0 36 .............................. ATCGTCACGAATAAACGTAACTCCTTCAGAATATCT 163822 30 93.3 37 ............G....A............ TTTAGAAAAACAGTTGAATTTAAAGGAATTGCCGTAA 163755 30 90.0 36 ............G.............G.G. AAGGACAAAGGCCAAACGGTACACTTTACAAACCCG 163689 30 73.3 0 A......C.C..G..C.A.....CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 92.8 37 GTTTTTATCTAATTAATGTGAAATGTAAAT # Left flank : CAAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCATGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCGCTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGGGAATTTAGGATTTGGTTGTCGGTCGACAGTTTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CAATTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAAGCAATGTTCGTAGCCAATGTACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACATTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAAAATGGCTGTCATCTTCTCTGCCACTTCATAATACGTCAATGCTTCTTTTCCGGTAATACAATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCTGGTATGAATAAATCATCATGTTTCTGAAT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAATTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 144225-148459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYC010000009.1 Listeria booriae strain FSL L7-0269 NODE_9_length_163771_cov_36.430285, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================= ================== 144225 36 100.0 30 .................................... AATCCATAATAGCACAGGGGCGTGAATAAA 144291 36 100.0 30 .................................... TGCGGCAGATACATAGATATCGTTCGGTTT 144357 36 100.0 29 .................................... ATATACATCCTTACCACGGTACCAGCTTG 144422 36 100.0 30 .................................... AGTCAATAACGACATTAGAGAATGCAAATG 144488 36 100.0 30 .................................... TTTGTGCAGTAAACCCATTTTTTAACGTCA 144554 36 100.0 30 .................................... TAATATCAGTTCTCCCTAAAAGATAATCTA 144620 36 100.0 29 .................................... GCACTTAAAGCAGAACTAGAAGTTTGGAA 144685 36 100.0 30 .................................... TTACTTTTGCATGGGATGACAACACGGCGA 144751 36 100.0 30 .................................... GTTCTGGAGCAGCCGGTAAAGACGTTTTCC 144817 36 100.0 30 .................................... TTTACAACATGAACCTATTCAAAGCCATTA 144883 36 100.0 30 .................................... ATTAAGAAGGATGAAAGCACTAAGCCTATA 144949 36 100.0 30 .................................... ATATCTTTCAAGCTTTTTATGAATTGCTGG 145015 36 100.0 30 .................................... TATTCTTTGTCGCCGATATAGACTTCGCTA 145081 36 100.0 29 .................................... AAACACGCACTAGGCTTAGATAATACAAA 145146 36 100.0 30 .................................... ACACGTCAGTACCAAGTCTGGTAACACATG 145212 36 100.0 29 .................................... ATCACTTTACGTTATGTTTGAAAACCTAA 145277 36 100.0 29 .................................... CGAACGTGACGGCGTTTTTAAGAGTATTA 145342 36 100.0 30 .................................... CCTGTTGGTAGTGTTCCAAGCTCCACGTAA 145408 36 100.0 30 .................................... AGACGCGATCGAACTGCAATATTTCAGCCT 145474 36 100.0 30 .................................... GAGGGATTGCACAAGGTAATCGGTGTCTTA 145540 36 100.0 30 .................................... CATATTTCAAGTCGTTTATTGCAGATAGTG 145606 36 97.2 30 .......................A............ TAAAGTGTTCCAAAACAGCTCCTGAGGTGT 145672 36 100.0 30 .................................... GTGGTGTCTACATCATCAGCAATGAATATA 145738 36 100.0 30 .................................... AGGAAGATGCTTTCTTAGAGCTGTTAGTGG 145804 36 100.0 30 .................................... ACGATAACTTTAAAAGTGCAATGATTAACC 145870 36 100.0 30 .................................... ATAAAGGCGGTTACGACACATTTAAAATTA 145936 36 100.0 30 .................................... GTACGTTTGGAAAGGAATCGGAGAAAGCTC 146002 36 100.0 30 .................................... AGATGAATTGATTAGGCGAACAGCCTATAT 146068 36 100.0 30 .................................... AGAACCAGGTAAACAACCTCAAAACTAACG 146134 36 100.0 30 .................................... TCTGCAGACGGTAATTTTACTATCAATCCC 146200 36 100.0 30 .................................... GCACCACATAGGATCGTATGAACGTCTTAT 146266 36 100.0 30 .................................... GAAAAGGATCAACAAGTGTCATACACGTCG 146332 36 100.0 30 .................................... AAGACTGGACAACAGGTGGAGCAATGGCTG 146398 36 100.0 30 .................................... CGTTTTGGACGGTAGATGTAACGTTTCGCT 146464 36 100.0 30 .................................... GAAGTAGAAACAACATCGCTAAGTTGGCGA 146530 36 100.0 30 .................................... TGCCTACCACAACAGGCGCTCATATATCAA 146596 36 100.0 30 .................................... ACAGGCTCCAAGAAATCGCTATTGAAATAA 146662 36 100.0 30 .................................... ATTTGATTGATAGTGATACAATCAAGCATT 146728 36 100.0 30 .................................... ATACTATAAATTTTAAAAGGGCTCACTTTA 146794 36 100.0 30 .................................... GATTGGATAAAATGTATGAAGGATTATCAA 146860 36 100.0 30 .................................... AAGGAATTGAAGGCGTGTGGATTCCAGTTG 146926 36 100.0 30 .................................... TTATCATTTTGCAATTCAATCGTAACACCT 146992 36 100.0 31 .................................... AAAAGATAGTGAGGGTGTTGAAAATGATTGA 147059 36 100.0 30 .................................... TAAAGTTTTTATATGGGGATTCATACATTA 147125 36 100.0 30 .................................... AAAAGAGAGATAGTAATAGAAGGAGGATGT 147191 36 100.0 29 .................................... CGAAGGTGTTAATATCGCACCAGAACCAA 147256 36 100.0 30 .................................... CCGAGGCAAGCCAGCTATTTGGTGGCAACG 147322 36 100.0 30 .................................... AGCTAACGTACTATTCGTATTCGATGATGC 147388 36 100.0 30 .................................... CAGTCAACGCTAATGCTAAACATGTGGTCG 147454 36 100.0 30 .................................... TTGACGCTGGTATTAAAGAAGTAGAAAACG 147520 36 100.0 30 .................................... AAATCTTTAATTGTAGCTAGCTCCTTCTCG 147586 36 100.0 30 .................................... TCGAAGGTGTTAATATCGCACCAGAACCAA 147652 36 100.0 29 .................................... ATTTGAAAGAAGCAACAACGGCATGAGGA 147717 36 100.0 30 .................................... AACCTAAAGACGAAGAAACGGGCAACGATA 147783 36 100.0 30 .................................... ATTATGTTCTTACTGTAGACTGGTCTTTTG 147849 36 100.0 29 .................................... CAATACCTTAGGAGTCGGGGGTCTTTGGA 147914 36 100.0 30 .................................... GTGAAGGTCGGAACAGCAACGGAACAGCAA 147980 36 100.0 30 .................................... CAAAGTTTCCTTGTTCGAAAGCATCATCTA 148046 36 100.0 30 .................................... TTCGAATATATGGCGGTGGTTCTTCCAAGG 148112 36 100.0 30 .................................... TCTCCCTTCACCTTTGCTTTTGCTGTTATA 148178 36 100.0 30 .................................... TTTCTTATCTAGACCTCCGTTAAAGGTATT 148244 36 100.0 30 .................................... ATTGAGGTAGATGGGCAGAAGCTACTTAGG 148310 36 97.2 77 ............................C....... CGGCGCAATAGCCGGGGCGCATTAGGCGGATTTTGGTATTAGGAAACATATATTATGTTATAGCGTATAATATGGTT 148423 36 77.8 0 .......................AAA..CC...CCA | G [148450] ========== ====== ====== ====== ==================================== ============================================================================= ================== 64 36 99.6 31 ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Left flank : ATATTATAAAACTAATATTGGGTATGAGTATAACAAAGCCAACCCTTGTGTTTGTAGAGGGATTTAGATCTGGTCTGAATGATATAGAATGTGCAAATGCAGAAGGAATGTTACAGGAAATGGCTAGAAGAGGTATGCATGTCATTGTACTTGACGATAATTTGGTAGGTGCTTCTGTAAATTACTATTACCAAGATTTGATTGTAAATAAATTAGAAATATTGGGTGTTAAAAAGATTATTCTAGAATCCAGCCCTATCTTGAGTAACTCTGAAGACTTTCTGCAAGCGATAAATTGGTCTATAGAGGCTGTGGATAAGTCCAAGGGGAAAGTAGTGGAATTGGAGCTACAGTCTGTGGATAACTTATGTATTTTTACATTGATCTATTTAATTTTCACATTTTTAAAATGGCCACTAATTGTTGATTTTAGAGGGGTTAGGAGTGATTTGATAGAATATCTTGCAGAGATTGTGAGTGGTGAGGTATAATTAGGAGGT # Right flank : ATGGGCTAAAGAGCAACATAAGAATTTCATAATGTGTTGCAGGTAATTGCGACAAATGTAAAGGCATATGTTAAACTATTTATTAAAACAAGCAATAGTCGGAGGCGTATATATGCTTTTTTTAGACAAAACAATCGAACTAAACGATACAGAAATGACGATTTACCACTATGTAGTCGGCAATTTGGACACGGTTATTTACATGCGGATTCGGGATCTAGCCGATGCCACCCATGTTAGCACAACGACAATTTTACGATTTTGCCGGAAGTTTGGGTGTAACGGTTTTTCCGAGTTTCGTGTGAAGCTGCAAATGTATGCGCAGAATCGGACGAAAATCAGTGTGGATATGTCGGATGAGACAACGTATATTGATTTTCTAAAACGCACAGCTCAGCCTGAATTCAAGGCGAATATTGCCCAGTCTGCGAAAATTTTACGCGATGCGGAGTTGGTTTTATTTGTTGGCATCGGGGCGTCCGGAATTATCGCTGAATATG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //