Array 1 190530-192571 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOEL01000007.1 Cronobacter turicensis strain MOD1_Md1sN Md1sN_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 190530 29 100.0 32 ............................. GCTGCGCACCCTTAACATGCTATTGATGTGTA 190591 29 100.0 32 ............................. TGTACTTTCCTGATAATGTAGTCATTCAGTAA 190652 29 100.0 32 ............................. CGCCGCGCCACCCGTCAGGGCCAACGCCGGCA 190713 29 100.0 32 ............................. CCGCCGCGTTTGATATCGCGCCAGAATTGCAG 190774 29 100.0 32 ............................. CTGCTGAGAAGCTGAAACAGGCGCTTGAAGTC 190835 29 100.0 32 ............................. CGATCAGCTCTGAACCCTCGTCAGCTGCGTGA 190896 29 100.0 32 ............................. CTCACAGTCATCTACGCAGCGCACTTTGCTGA 190957 29 100.0 32 ............................. TTATCCCCGCATTTCGGCGGGAATGACGACCA 191018 29 100.0 32 ............................. CATAGCATTGCGCACAGCCTTACTTTCGTACA 191079 29 100.0 32 ............................. TGGCGCAAACCGCTTCCTTCATGCGCGACCTT 191140 29 96.6 32 ............................A GATAACGGTTCGCTGTGATAGCTGCTGCGGCC 191201 29 100.0 32 ............................. TTTGGCCGGTCGCGGCTGGACTGGCTAACTGA 191262 29 100.0 32 ............................. TTTGTTGCCGCGCCGGTCGCAGTGCTTTTAAC 191323 29 100.0 32 ............................. AAAAGGACAAGGTCCGCAGCGGTTATATTTTT 191384 29 100.0 32 ............................. CTGATTAATTAAGGGGAAATTATGATTAACGG 191445 29 100.0 32 ............................. TACGTAAACGCGACCCATTATTCTGAGTTCAG 191506 29 100.0 32 ............................. GCGCTGGCCCTAAACGTTCAGGGGTAAACGTG 191567 29 100.0 32 ............................. ACAGCGTTTCGCCATTAACGATATAAGTATTC 191628 29 100.0 32 ............................. CGTGACATTGTCGGAAACCACGAAGCACTGGT 191689 29 100.0 32 ............................. TTTGTTACTTATCGTGGCTATCGCCCTTTTTG 191750 29 100.0 32 ............................. GCGGCGAACTGCGCGCGCGAGCTTATCTTAAA 191811 29 100.0 32 ............................. TTCATCGCTGCGAACGGTCGTGACCTGCCGCA 191872 29 100.0 32 ............................. CCGGTGCTCGACTACGTGTTTAAAAAAATCGC 191933 29 100.0 32 ............................. GTGCTATGCAGTTCGGCCTTTACGTTTGCTAT 191994 29 100.0 32 ............................. GCCTGTACCTGCTCGACGCGTATCCGCGGCTC 192055 29 96.6 32 ..........T.................. GCGTGACGAGTGGAGAGGGAAAAGGGCAGCAG 192116 29 100.0 32 ............................. GCTACCGCAATCTCCACTAACGTCGTCGACCT 192177 29 100.0 32 ............................. ACTATACGGATAATACGGCAAGCTGGATATTG 192238 29 100.0 32 ............................. TGTACCAACATGTCGAGAAAGAGATTCACAGA 192299 29 100.0 32 ............................. TACTCGGCAAAATTGGTGGGGAGCTGGAACCA 192360 29 100.0 32 ............................. TCAGAAATCGTACTCAATTTCCTGAACGTGCG 192421 29 96.6 32 ........T.................... CTCAAGACGGTTGGTGATGACGACAAGTCTGA 192482 29 100.0 32 ............................. CCGGTAATTGGACCACCCGCAGCGGTAGCGTA 192543 29 93.1 0 ..........................A.A | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GATGAAAGCTTCAAATGGATGATGGCGAATAACATCGCGTTTATCGTCGTTAACATCAATATCAACTACCGGCGGCCCGCCGTGCTCGGCGATCTGCTGACCGTCACAAGTCAGGTGAAACAGCTTAACGGTAAAAGCGGGATACTAAGCCAGGTCATCACGCTGGAGCCCGAAGGCGAGGTCGTCGCCGATGCGCTCATCACCTTTGTGTGTATCGATCTGAAAACTCAGAAAGCGCTGCCGATTGACGGCGAGCTGCGTGAAAAACTGGAAAAACTCACAGGGTAAATTCTGCAATAGCGGTGTCTGTGCCCGTCATCGTGGATTTATCGCCGTTGAAGATAAACAATCCGGTAGATGTTAACGGTCCACAAGCGTTACTGAAAACGCCTTCAAAATCAACAGGGCCGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTTTGTGGCGATGAAAGTTCATTAATTTCAGTAGGTTATATTTAGT # Right flank : AAACTTTGTTGGCTGTACGAACAGCGCGACGCTGTCAGCCCCATTTCCCGCCACATTCTTCAGCACCGTTTATACTTCAAAGCCATTGTTCAATTTTAAAGTCTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGCAAAGGGTTGCACGCGCATCTCATCTGCCACTGCCTGCTTATTGAAACTGAACATCACGGGCTGGTGCTGGTGGATACCGGTTTTGGTTGCGATGATATGCGCCACCCTGGACGCCGTTTGCCGCTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCATCATATTAAGGCACTCGGCTTTAAGCCGGAGGATGTCCGGCACATTGTGCTGACGCATCTGGATTTTGACCACGCGGGCGGCATCAGCGATTTTCCGCACGCGCAGGTGCATTTGATGCAACGGGAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 218557-220950 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOEL01000007.1 Cronobacter turicensis strain MOD1_Md1sN Md1sN_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218557 29 100.0 32 ............................. GCGTCATTTTCTACTACGTTGATGGTCAGCTG 218618 29 100.0 32 ............................. GGGTAAATAATGAAAAGACGACACGCCATTTA 218679 29 100.0 32 ............................. GATATTGTGGGAGGGGCGACAGACATGGCAAT 218740 29 100.0 32 ............................. CGTCTCTAACTGCCGGTCTAATTTTTGGTCTC 218801 29 100.0 32 ............................. CCCGCCCAACTCCGATCGGCATCTTGGCAAGC 218862 29 100.0 32 ............................. TAATCGGCGACGGCCTGCGACGTGGTAACAGT 218923 29 96.6 32 ............................T GGGGCGTTCTCAAATCGCACGACCATTTCACC 218984 29 100.0 33 ............................. TTTGGGTGGATTCCCAAAAAATATATCGTTGAT 219046 29 100.0 32 ............................. CACACGCTAAACCCGGCGATGAGTATCAAACG 219107 29 100.0 32 ............................. CTGGCTTGAAATCGTTGCGGCAGCTCAGGCGG 219168 29 100.0 32 ............................. AAAGTGGAAACGCTGCTTGAGGCGCAGCAGCA 219229 29 100.0 32 ............................. CGGGTTACATATAGTTTAGGCACAATATCAAA 219290 29 100.0 32 ............................. CACCACATAGCGACAAACCGGTATTTTTCCGC 219351 29 100.0 32 ............................. CTGGCGCGGCGTGCCGTTTCAGGTTTCCGAAG 219412 29 100.0 32 ............................. CACATCCATGTAGTGGCGATTATTATTTGCCA 219473 29 100.0 32 ............................. GTAAATACCTTTGCTCGTTGTTGTGGTGATTT 219534 29 100.0 32 ............................. ACGGCCATGTAAGTGTCACCGAGGTTATTAAT 219595 29 100.0 32 ............................. TGCGCTGGCGAACGCCGCGGGAGGCCAGCAAT 219656 29 100.0 32 ............................. GTTGTGAAACAAAAGACATAGCCAACGATATG 219717 29 100.0 32 ............................. TGGGGCGGGTCAAATACCACAACAGGGAAACT 219778 29 100.0 32 ............................. CGCGGCATTCACACAGGGAGGCAGCGTAATGT 219839 29 100.0 32 ............................. CGTTTTGCAGATACCGCGCATGCGGCGGGTGA 219900 29 100.0 32 ............................. CACCTGTGATGGAGATGTGCCTGTTATGCTCA 219961 29 100.0 32 ............................. TAAAATGGCCTGAACCCCCGGCTACAGAGCAA 220022 29 100.0 32 ............................. GCATGTAAGCGCCGCGGCTGGCTGACCAGCAA 220083 29 100.0 32 ............................. CAGTGAGCTCACTGTCCGCGCTGTCGAGTATC 220144 29 96.6 16 ............................C AGCGTTTTATTCACCA Deletion [220189] 220189 29 100.0 33 ............................. CCTGATGGACAAAGTGTTTAAGGTCAACTTTGA 220251 29 100.0 32 ............................. CGACCGCCATTTTTTGAGTGTGGTTTTTGAGC 220312 29 100.0 32 ............................. AGGGAATCTATGGCGCACGCAAAAGACCGAAT 220373 29 100.0 32 ............................. CGCACGATCCCAAGCCCCAAAAACGACCATTT 220434 29 96.6 32 ..................A.......... CGTCGCATAGGGCTATCAGCCGCGCGAACGCC 220495 29 100.0 32 ............................. TCTATCACGGGCTTGATGCTCACTGCCGGATT 220556 29 100.0 32 ............................. TGGTCAACCTCCTGCGCCGGTACTGCGCGCCC 220617 29 100.0 32 ............................. ACGTTTCCTGCTGGGCATTCTGGGTCTGGGTA 220678 29 96.6 32 .............G............... CTCTCGGAGTTCCTGTGGCTGAGCTATTCTCT 220739 29 96.6 32 .............G............... GCCACAGCATCGCGTTTCAGGACGCATCTGAA 220800 29 96.6 32 .............G............... TTCTGGTCTGCCATTTTCATAAATGCTTTAGT 220861 29 96.6 32 .............G............... CATCATAGACCTCAACACAGCAGACATATTTA 220922 29 93.1 0 ..A.........................T | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATGTCCTCTCGGCTGGTGGTATTTCGCCTCCAGCGCCTCCTGCAGATGCTCAACCGCCAGCGATTCCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGTCGCTGATGAGTATGCTGGTGGTCGTGACGGAAAGCGTCCCGCCCAGGCTTCGCGGGCGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGGGACGTGTCGCGCCGGGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGACTTCCAGACGTACGGCGTTAACCGACGGATTCCGGTAGATTTGGACGGCCTGCGGCTTGTTTCTTTTTTACCGTTGGAAAATCAGTAGGTTAATAGTTCTTTAATAATATGAAATTGTAAACCAAACGTTGGTAGGATGTTGAGTGCCAAAAAAGAGTAATAAATACAGCTATGTAGCTTTAGA # Right flank : TCATCCGTTGAGGCTTCTTTCTGCGCCACCAGCGTGTTCCCTAATGCGGCGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGATCCCCACATCCGGCGGGTGCGCTTCGCTTACCCACCCTACAGGCGCAGATCCCCATGTCCGGTTAGTGCGCTTCGTTTACCCACCCTACAGGCGCAGATCCTCATGCCCGGCGGGTGCGCTTCGCTTACCCACCCTACATAAGTTGCCAGCTGGTGGGTGCGCTTCGCTTACCCACCCTACATAAGTTGCCAGCTGGTGGGTGCGCTTCGCTTACCCACCCTACATAAGTTGCCAGCTGGTGGGTGCGCTACGCATAACTGCTCTGCACAAATTCCCCGCGCCTGCTGCTGATTGCGCAATAAACCGGCATCCGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //