Array 1 829-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CIJZ01000105.1 Neisseria meningitidis strain NM2934, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 828 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 762 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 696 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 630 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 564 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 498 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 432 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 366 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 300 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 234 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 168 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 102 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GTGCTACAATTTTTTGTATCCATTCCCAGCCGGAAATTA # Right flank : T # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 454-1478 **** Predicted by CRISPRDetect 2.4 *** >NZ_CIJZ01000034.1 Neisseria meningitidis strain NM2934, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 454 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 520 36 100.0 30 .................................... TATGGTAAAGGTTTCTGTTGCGACCCGAAT 586 36 100.0 30 .................................... TATCTGCCTTTTTACAAGCTCGCTTTCTTT 652 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 718 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 784 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 850 36 100.0 30 .................................... TATATGCCTGTTATTGTTTTCAGCCTTTTG 916 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 982 36 100.0 30 .................................... TACCGACATTGACGGAAAAACCCGAAAGCA 1048 36 100.0 30 .................................... TAAAAATAATAACCCAATACACGATGTTAA 1114 36 100.0 29 .................................... TAGGCCGCTTTATTTCTGCCATATCGACG 1179 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 1245 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 1311 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 1377 36 100.0 30 .................................... TACCGACATTGACGGAAAAACCCGAAAGCA 1443 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //