Array 1 148216-150406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAAMA010000005.1 Serratia marcescens strain P60-CPSm N_5_length_247232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 148216 28 100.0 32 ............................ TGGCCGTGGCGAAGCGTTCCCGTCTTGTAGAC 148276 28 100.0 32 ............................ TTGTAGAGAGTCCCGCGAGGGGACTGCCACAC 148336 28 100.0 32 ............................ ACATCAAGCGAACGACAGTCTCATTTGACGAG 148396 28 100.0 32 ............................ ACACCAATAACAGCGGCCAGTAAACACCATTG 148456 28 100.0 32 ............................ TTGCGTGGGCGTTCTCCGTTGATAGATGGGAT 148516 28 100.0 32 ............................ AGCAGCAGCAGGCAGAATCATGGAGCAAGCAA 148576 28 100.0 32 ............................ AATCAGCCGACTTCATGGAGTTGGCTTTGGAA 148636 28 100.0 32 ............................ AAACAATCTCCGCGCCGCTCTGTTGCTCTTAC 148696 28 100.0 32 ............................ AACAGGAGGTGAACATGATGGCATCGTCAACT 148756 28 100.0 32 ............................ TGAGCTCCATCCTCCCACACTGAGGCTTTAAG 148816 28 100.0 32 ............................ CCCAACCGCTTCCGATTGAGTGCAGGCCAGTA 148876 28 100.0 32 ............................ TGGCGGGGCTTGGTGGGTGGTGTGCTATTAGA 148936 28 100.0 32 ............................ TGGGGCGTTTCCGGTACGTTCTGCTTATCGCC 148996 28 100.0 32 ............................ TTGAAGCGCCCATCAAGCATCATGTCGCGCAA 149056 28 100.0 32 ............................ GGTTTGCATCCGGCGTGGCTTCCCACGCCTCA 149116 28 100.0 32 ............................ AGTCGGGGAAGCTGCTCCCCTGCAGTTCTCGC 149176 28 100.0 32 ............................ CAACGCTGTGAGCACTGCGGGCAAACCCGCGA 149236 28 100.0 32 ............................ AGCCACACCAGGTTGTCGTAGTTGGTGGTGAA 149296 28 100.0 32 ............................ AACGATTATAACGGGAGCGGAATCGCCATCGC 149356 28 100.0 32 ............................ ATGAAGGAGCAGAGCAATGGATAAATTCAGCG 149416 28 100.0 32 ............................ GGTGCAGTAACCCGCCTGCGTTTTATCCAGCA 149476 28 100.0 32 ............................ ACCATCGCCAAACGCAACGATCGGGATAGTGA 149536 28 100.0 32 ............................ TGATCGACGTAGCTTCACAGGTAGGCGAATGC 149596 28 100.0 32 ............................ CCCAGTCATGATGGAGTTAATGGTTTCACGTT 149656 28 100.0 32 ............................ AGGTTGTGGTGATGCCTTCGTGCTGACGTTCG 149716 28 100.0 32 ............................ ATCGTCCGTGCTGAGGGGCTGATCACCAACAC 149776 28 96.4 32 C........................... TGATTTTCAACGTTCAGCGATGCCGCTGCCTC 149836 28 100.0 32 ............................ AATATCGCGGGCAATTTGACGTTGTTCGCCCT 149896 28 96.4 32 .............T.............. GTATAGCCGGCATCCAGGCGCACCAGCTTGCC 149956 28 96.4 32 .............T.............. AGCTTGAAGAGGAAGAGGCTTACGCCTTGAAA 150016 28 96.4 32 .............T.............. TGAAGCGCAAAAAAATGCTGGAGTTCATCGAC 150076 28 96.4 32 .............T.............. TTCTTGTGCCAAACAGTCCCGCGCTGCTGGTT 150136 28 96.4 32 ..A......................... AACCGGCGACGACCAGCGCCAGCACCAGAAAC 150196 28 100.0 32 ............................ ACCTACCGCCAGCGCATAGGCGTGACGGTAAG 150256 28 100.0 32 ............................ TGCTCCACCGTTGTGGCGCATCCGTGGGTATT 150316 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 150376 28 96.4 0 ....................A....... | A,A,G [150396,150399,150402] ========== ====== ====== ====== ============================ ================================ ================== 37 28 99.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTGAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 159256-160964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAAMA010000005.1 Serratia marcescens strain P60-CPSm N_5_length_247232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 159256 28 100.0 33 ............................ CTCCACGCGCTCGACATTTGGTGAAACCGTCGA 159317 28 100.0 32 ............................ TGAAAAACTTCATCGACAGCCTTCCACTCAAT 159377 28 100.0 32 ............................ TAAGAAGCCCACAGATACGCCATAACCTGAAA 159437 28 100.0 32 ............................ AGCTGATGCCGTGATTGGCCGCGTTGGCCCGT 159497 28 100.0 32 ............................ TGGCTATCCAGGCCGGTTCTACGGCTACAGCA 159557 28 100.0 32 ............................ TGGCTTTCGTTGCAGTCCATCCAAAACTCAAA 159617 28 100.0 32 ............................ GTGCGTAGGTGATGCAGCGTGCTGGCTTACCC 159677 28 100.0 32 ............................ AAAACGCTTGCCCCTGGGCATCATACCAGCTC 159737 28 100.0 32 ............................ ATCTGCAGTGCGCATCCTGCAACGTCCATCAC 159797 28 100.0 32 ............................ TATAACGGCTATTCTCAGGCTCACTTACTGAA 159857 28 100.0 32 ............................ AAACTGAAGTGGTAACCCAGCGCTCTACTTTC 159917 28 100.0 32 ............................ TTGCCATCAGTTAACCTCCTGCAGTTGCCAAT 159977 28 100.0 32 ............................ TTAGTGCGGGGCTTTTTGCATTTCAGCCCCAG 160037 28 100.0 32 ............................ CGCTGGTTTACAAAACTGGGCCGAACGCTGGC 160097 28 100.0 32 ............................ TTTCACGAAGTGAGGCTTGTAACTTCCTTGGC 160157 28 100.0 32 ............................ TGGTAGATGGAACTCGTTCTCCTTGCGGCTGC 160217 28 100.0 32 ............................ TGCTGTAGAGTGAACGACGGCCGGGAAATCAA 160277 28 100.0 32 ............................ TGGCCGGACGAGGTCGCAAAATGGGGCCACCT 160337 28 100.0 32 ............................ GGCGAGGAATGGAAGCTGCAGGCGTTTCGCGA 160397 28 100.0 32 ............................ TTCGCCTGCCAGGGTTCCGATGTCCATCGTGC 160457 28 100.0 32 ............................ GAGAGGTCTGGCAAGATGGAAAACAGCCTGCG 160517 28 100.0 32 ............................ TTCACCCCGTTGGCCAGCGTTTCGGTGCCGAG 160577 28 100.0 32 ............................ TATCGCGGCCGGGCAATCTGCGGCGACAAACA 160637 28 96.4 33 .....T...................... CGCCGATATAATCGCACAGCCGCCCCGGTGGGT 160698 28 100.0 32 ............................ TACCGGAACGGGACGCAGGTCGCCCAATCTAT 160758 28 92.9 32 .............C....T......... TTGCGGGCCTTTCAGCTCGGTGGCGTGCTCCA 160818 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 160878 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 160938 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //