Array 1 2933660-2931980 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012513.1 Salmonella enterica subsp. enterica serovar Thompson strain RM1984 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2933659 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 2933598 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 2933537 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 2933476 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 2933415 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 2933354 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 2933293 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 2933232 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 2933171 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 2933110 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 2933049 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 2932988 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 2932926 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 2932864 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 2932803 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 2932742 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 2932681 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 2932620 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 2932559 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 2932498 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 2932437 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 2932375 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2932314 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2932253 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 2932192 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 2932131 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 2932070 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2932009 29 93.1 0 A..............A............. | A [2931982] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2951017-2949830 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012513.1 Salmonella enterica subsp. enterica serovar Thompson strain RM1984 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2951016 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 2950955 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 2950894 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 2950833 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 2950772 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 2950711 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 2950650 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 2950589 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 2950528 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 2950467 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 2950406 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 2950345 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 2950284 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 2950223 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 2950162 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 2950101 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 2950040 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 2949979 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 2949918 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 2949857 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //