Array 1 8314-8892 **** Predicted by CRISPRDetect 2.4 *** >NZ_VETB01000026.1 Escherichia coli strain KCJK8794 NODE_26_length_32611_cov_3.697574, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8314 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 8375 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 8436 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 8497 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 8558 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 8619 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 8681 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 8742 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 8803 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 8864 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30150-31276 **** Predicted by CRISPRDetect 2.4 *** >NZ_VETB01000036.1 Escherichia coli strain KCJK8794 NODE_36_length_31287_cov_3.849230, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30150 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 30211 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 30272 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 30333 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 30394 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 30455 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 30516 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 30577 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 30638 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 30699 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 30760 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 30821 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 30882 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 30943 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 31004 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 31065 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 31126 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 31187 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 31248 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //