Array 1 533895-538964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOF010000002.1 Vibrio cholerae strain C11G.R Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 533895 28 100.0 32 ............................ GACAAGAGCAGGTAGCATCAAACTTTGAGCAA 533955 28 100.0 32 ............................ AATAACCACCATAGTGTAATTTGCTTGACCTG 534015 28 100.0 32 ............................ TGCAGAAATCGAGCTGTTCGAGTTCCCTTGGC 534075 28 100.0 32 ............................ ACGCAGCCGAGCAGAGGTAGATGCCTACCTCG 534135 28 100.0 32 ............................ AGACCGATGGTCGATGCGGCAAGTACGGTGAT 534195 28 100.0 32 ............................ TTACTGGTTGAGTGACCACCAAGGCGCTGATG 534255 28 100.0 32 ............................ TCGGTCCCAGGCTTCAATCCCCCACTGCCATA 534315 28 100.0 32 ............................ CGAAGGGTGACGATTACGCAAACCACATCAAG 534375 28 100.0 32 ............................ GCCCAAAAGTAAGCGTCACGGCCTTTGTGGAA 534435 28 100.0 32 ............................ ACTATGATATTTTCAACGTCAAGAGTGGCGGT 534495 28 100.0 32 ............................ GATTAGGCCTTTTTTAAGAAAACTCAAACCTT 534555 28 100.0 32 ............................ GAGCAGGAGAAAATAACCACGGCTATTTGCAC 534615 28 100.0 32 ............................ TCGATACTTGAGAAGAACGTTCCCGTGTCCAC 534675 28 100.0 32 ............................ AAGCACCAGTTTAATGAAGTTGTCTCTTGTCG 534735 28 100.0 32 ............................ ATCATTAGTCGTTTTTTAGTGACAACCCTATG 534795 28 100.0 32 ............................ TAAAAAGCAATTACCAAATTCAGATGATCCGG 534855 28 100.0 32 ............................ GGATCGACTCATAGCCCTCCGCTTGATATGGT 534915 28 100.0 32 ............................ CGAAATTGCAGAGTGATTTTGAGTCAGAGCTA 534975 28 100.0 32 ............................ TGTTTCGATGATATTGCGCCACTGTCAATCAA 535035 28 100.0 32 ............................ AACCGCCTCAGAGCCTGCTGAGTAAACTTGAC 535095 28 100.0 32 ............................ TAGCGACTCCACCACCTCAAAAGTTAGCCAGC 535155 28 100.0 32 ............................ AGCGAGGTCATCTCTGCGAGTCAAAAGAAAAT 535215 28 100.0 32 ............................ CGCAAGGGCTCCAATAAAGAGTCTTTTTTTCG 535275 28 100.0 32 ............................ TTCAAAGGTGATCCAGCTGCGTCCCGCTGGTA 535335 28 100.0 32 ............................ ACCAGCGCGATTTATATCATCTTGTGACCAAA 535395 28 100.0 32 ............................ TTCGCATGTTATTCACAATCTACTTACGAACA 535455 28 100.0 32 ............................ TCACTGTAAGTGACAACTTTGTCAGGTTTTCC 535515 28 100.0 32 ............................ TGCAGCGGCCTCTCGTGATGCCAGACTGATTT 535575 28 100.0 33 ............................ GAGAAGATGGAGCCCCTTGGGGTTCACTAGCAT 535636 28 100.0 32 ............................ AACAAGTTATTCAGAGTTAGCAAAGTTAATTT 535696 28 100.0 32 ............................ TTACTAACTCGAAATGAACTCTAGCAATTTGA 535756 28 100.0 32 ............................ AAGCCGTTAACGACTTCATTGGCGAAGCCCAC 535816 28 100.0 32 ............................ ATGAAAAGCCCTGACGTTGTGAGGATCGCATC 535876 28 100.0 32 ............................ TTTATTGAAAAAGCTTTGTAACGTGGCATCGT 535936 28 100.0 32 ............................ ACAAAGAATCATGAATGAAAATGACATAGCAT 535996 28 100.0 32 ............................ TTGACTCTTTAAACGCTCAGCTCGCTCAGAAA 536056 28 100.0 32 ............................ TTCATCACCCTCTTTTAGTGATGTGTCGTAGT 536116 28 100.0 32 ............................ GCTACGCCAAGCGCATGGAAGAGATGGGCCAA 536176 28 100.0 32 ............................ AAGCTAAGCCGCACAGGGTTTAACCGCTACGC 536236 28 100.0 32 ............................ AGCGGCGTAATTTAAAGGCGTAATTTAAAGGC 536296 28 100.0 32 ............................ ATGATGCAAAATTTATAGTGGATGCAAGAAGA 536356 28 100.0 32 ............................ AAGCTCCTGCATATCTGAGCTAGTTAAAAAAA 536416 28 100.0 32 ............................ TATTTGTACGAGTTTAAGGAGCTTGGACATAT 536476 28 100.0 32 ............................ GTTATGGGTAGAGATAAGGCGCACCTTTGCGC 536536 28 100.0 32 ............................ ATGATTTGCTTGGCCGTCTCTGTCATGACAAA 536596 28 100.0 32 ............................ TGATGGCACCAAGTGGGATTCTTGGAGCGATA 536656 28 100.0 32 ............................ ACGCTAGGCAGACAAGCAAGGCGAACCTTGCT 536716 28 100.0 32 ............................ GCGCCGTGATGGCATCAAGCTCGATGCGCGCG 536776 28 100.0 32 ............................ TTAAACAACCATCACGCAGCACGGCGCAATAT 536836 28 100.0 32 ............................ TCTATGGTTGGCTGAAAGATTTGCCAGAGATT 536896 28 100.0 32 ............................ GACATCACCCGTTACGAACTGCACACCATCAA 536956 28 100.0 32 ............................ ATCTGAAAAAACGTAAAGTTCATCATCTTGAT 537016 28 100.0 32 ............................ AAGGTGTGGTTTTATCGATGCCAAGCATATCG 537076 28 100.0 32 ............................ CCTCCGATACCACTCTAATAGAGTCCTCTATC 537136 28 100.0 32 ............................ ATCAGAAAGCTGCGCCCACGTTTCAATATCTG 537196 28 100.0 32 ............................ ATGAGTTCGTAACCGAGAAAGATGTGGCCGCG 537256 28 100.0 32 ............................ TGCTGAAAATGCATCACGGCGCGGCTCCTTCC 537316 28 100.0 32 ............................ CTGACTATGCGTTTTGAACCCCTGATCTATCG 537376 28 100.0 32 ............................ TTTCCCTTATGAGCTTCAGTAAATATCTGCTT 537436 28 100.0 32 ............................ CTGACTATGCGTTTTGAACCCCTGATCTATCG 537496 28 100.0 32 ............................ ATACTGCCTTTTTTAATGTGTGAAACGACTTT 537556 28 100.0 32 ............................ GATCTCGATGTGAATCAATCAACCAGCTTTAC 537616 28 100.0 32 ............................ AGTGGAGCGCATCTAATGGCGATCATGACGTT 537676 28 100.0 32 ............................ TAATGATCCTACTAGCCCACTACCCCCAATTG 537736 28 96.4 32 ...........T................ TTTACTGCAAAAGAAATAGGGCAGTTTTTATT 537796 28 96.4 32 ...........T................ TTTAAATGGCAGCGTCTGCACAATATCCACCG 537856 28 96.4 32 ...........T................ GAGAGCGCAGCGAGAGCAATCGACAATGCGAT 537916 28 96.4 32 ...........T................ ATAAAACGTGTCACCAAACTCATTCATCTGCT 537976 28 96.4 32 ...........T................ TACCACGGTTCAACGTCTTGCGGCTGCATGGT 538036 28 96.4 32 ...........T................ TAAAAATTCCACCGATAATGCCGCCCATGATC 538096 28 96.4 32 ...........T................ TCTCTCGCCCCCATTTTTGCCGCATCCGCATA 538156 28 96.4 33 ...........T................ ATGCGGGATTGTCAGCAATCGTATGCTCTGGAT 538217 28 96.4 32 ...........T................ CTGCGGCATCTGCTGAGGTTTTGAGTAGAGTC 538277 28 96.4 32 ...........T................ TTCATGGAATGGATTGATACATCAACAACTCC 538337 28 96.4 32 ...........T................ TCATTGTGATACTGCTTACGTAGCTCCTCCTC 538397 28 96.4 32 ...........T................ ACGAGCAGGACAGTATTTACACCACTTACCTG 538457 28 96.4 32 ...........T................ TGAGCAAGTGACGTCGGTTAAGCCTGTTATTT 538517 28 96.4 32 ...........T................ TAGCTGACCGTTGCTGTGGTTTACTTCTGAAC 538577 28 96.4 32 ...........T................ ATCACCATCGGCAGTGGTGGTAACGCCGAGCT 538637 28 96.4 32 ...........T................ TATAAGATGAATCCGATAAACAAGCCGCAAGC 538697 28 96.4 32 ...........T................ CCAGAGTTGTCGATACGCGACCGCTTCTTCAT 538757 28 96.4 32 ...........T................ AGCCTTACCTTGCACAACTAAGGTATCAATTG 538817 28 96.4 32 ...........T................ GCGCTCACTCAAACCCCAATCCTGACGGCCAG 538877 28 100.0 32 ............................ TACAACGAAGCAATTTTCGGTTAATAAGGGAA 538937 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 85 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AAGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTACGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCAGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 94561-97594 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOF010000011.1 Vibrio cholerae strain C11G.R Scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94561 28 100.0 32 ............................ ACGGCAAGCTCGCGGCGGTCATCTACATTGGT 94621 28 100.0 32 ............................ AGATTGGGCGTGCAGGTTGGCGTGAAGTTTAC 94681 28 100.0 32 ............................ GAGTGGGTCTTTGCCTTGTGCGAGCATTTGGT 94741 28 100.0 32 ............................ TTGCTCCAGACTCATAGCGGTCAATTGCGCTT 94801 28 100.0 32 ............................ AATCCCGCCCCAACTAAAAAACAGGACACTCC 94861 28 100.0 33 ............................ TTCAAGCAATGCAAGGCAAGTCGCTGAGAAAAA 94922 28 100.0 32 ............................ TTCCAAAAGGAAATGTAAACTCAATCGATAAT 94982 28 100.0 32 ............................ ATGCGTATCCTGTTGTGCCATTTCCTCGGTCC 95042 28 100.0 33 ............................ AGTTCACGCCAGTTTTCAATGCCGGCCTCTTTT 95103 28 100.0 32 ............................ ATGATGCACGCTATCAACAAACACGATCGTCT 95163 28 100.0 32 ............................ TTGTACCCTAACTTTTCACATGGTGTCATTTT 95223 28 100.0 32 ............................ ATACAGCCGAGAAGAATTCGAAAAGGCATATG 95283 28 100.0 32 ............................ TTTATGTGGCGGAAAGACTCGCTTTCGATACC 95343 28 100.0 32 ............................ ACTCGGGTCGCTCAGAGCGCTATCGCAACTCT 95403 28 100.0 32 ............................ TTTTGATTGCCACAGCCAATAAATCCAAAGTA 95463 28 100.0 32 ............................ TGCGTCTTTTGCGTTAACGGTGGCAAACTTCA 95523 28 100.0 32 ............................ TCGAAAATTTGATTAAAGCAAAAAGATAAGAA 95583 28 100.0 32 ............................ ACACGATAGAAGTCGAACAAACAATTTACAAT 95643 28 100.0 32 ............................ TCAGCAATGTTGATAGTTGTCGGGTCTAGCCC 95703 28 100.0 33 ............................ TAGAGCGCCTTGAGGTATTCGACCGATTTGATT 95764 28 100.0 32 ............................ ATTAACCTAACCCCTCTTTTGGTTTAGCGTTT 95824 28 100.0 32 ............................ ACTATCTGTAACTGTTACAATTCTAGCCATAG 95884 28 100.0 32 ............................ AATATGGAGCATGAATACGCCAAGGATATTGG 95944 28 100.0 32 ............................ AGTTTGCAAAAACTATCGGCATTGGCCCTAAC 96004 28 100.0 32 ............................ TGACTTAGGCCACTTTTGACGACTTGCACCGG 96064 28 100.0 32 ............................ CAGAATCTACTTTTTTCACCTTGACCAACTAG 96124 28 100.0 32 ............................ ATAGAAAGAGAGGTTAACAAAGGCAACGTTGA 96184 28 100.0 32 ............................ CAAAGGATCACGTTTTTCTCAGCGACTTGCCT 96244 28 100.0 32 ............................ ATGTTTTTTATGTTTGGGGATCCTGTTCGCCA 96304 28 100.0 32 ............................ ATATTGGCGCCTTTAGAGTTCTCCCAACCTTT 96364 28 100.0 32 ............................ GTTTGCTGAAATCATCGAAGCAGTTGAAGAAA 96424 28 100.0 33 ............................ CCTAGGGATTCCATCAGCCACGCGCTGCTCAAT 96485 28 100.0 33 ............................ AGTAAATGGGTTTTTCATCGAGCAGCTTTAACA 96546 28 100.0 32 ............................ GCTCAAGAAAAAAGAGCGCGAGCAAGTCCGTG 96606 28 100.0 32 ............................ ATTACCACGATCCCATTGCTCGGAACCCCATT 96666 28 100.0 32 ............................ GTGAGGATGACCCGATATGCACACAGCTCCGC 96726 28 100.0 32 ............................ TACTGGCGAGATATCCACATGAGCAAACCGAG 96786 28 100.0 32 ............................ ACCGTGCGCATCAGCAGAAAGAAACGAAACAT 96846 28 100.0 32 ............................ CGTGTAATCGACACCCGTCAAAGCGATAACAG 96906 28 100.0 32 ............................ GATCACGTTTGCTTTGGTTGTGTTCTCGTCTT 96966 28 100.0 32 ............................ TTTAGGGCGGGGCTGCATAGCAGGGCAAGTGG 97026 28 100.0 32 ............................ ATCCTAAAGGCACCTTGCCTGCTAACGTGGGC 97086 28 100.0 32 ............................ TGGCGACCATGTGTTATATGATCTCTTTGATT 97146 28 100.0 32 ............................ TGTCACGCTCTCAACGTAGTTCTTGGTAATGA 97206 28 100.0 32 ............................ AATAGGGGAAAATGAATGAAATACGCACAAGG 97266 28 100.0 32 ............................ TTTATTACCAGTCTTGGCAGGCTGTCCAGCTC 97326 28 100.0 32 ............................ GCGCTCCCACTTTGCTATGGTCTGCTGTGTAA 97386 28 100.0 32 ............................ AGATCGACACAGTAGTTGATTCGGTCAACTTG 97446 28 96.4 33 ...........T................ AGCACAAACCGCCGCTGATCACTTGGCGATTCA 97507 28 96.4 32 ...........T................ CGTAGGCTGGTTTATGCAGGCTTTTGGGCTGG 97567 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 51 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCATTGTGCGCTTTGCCGTTTATTTACTTGTATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAGAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : ATCTGCTTTCCCCATCATATGGGTTATCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCTGTGCCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGATCTCCTTATCTAATGCGCTCTAGCATCACACCTGCTTCCATATGGTGGGTGTAAGGGAATTGGTCGAAGAGAGCAAAACGCACCACTTGATGGGTTTCCCCCAAGACTTGTAAATTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTAGATAATGCGCTCATAACCTTGCACCATTTTACAGGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAGCGGTAGCTTTGTAGATCGACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTACCTTCCATCGCCTGAGTAAACTCTTCTGCTGACATGCGAATGATCTGCACGTTGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //