Array 1 42969-43912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHMSX010000010.1 Escherichia coli strain KCJ2K2539 NODE_10_length_181441_cov_10.319269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42969 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 43030 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 43091 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 43152 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 43213 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 43274 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 43335 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 43396 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 43457 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 43518 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 43579 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 43640 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 43701 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 43762 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 43823 29 93.1 32 .A.C......................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 43884 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69611-71165 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHMSX010000010.1 Escherichia coli strain KCJ2K2539 NODE_10_length_181441_cov_10.319269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69611 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 69672 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 69733 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 69794 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 69855 29 100.0 32 ............................. ACACAGGCGCGAAAACAATCGAACGCGCTAAA 69916 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 69977 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 70038 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 70099 29 100.0 32 ............................. CGTGGAGGAGAGGGCGACGCGCTGGCAGACAC 70160 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 70221 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 70282 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 70343 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 70404 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 70465 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 70526 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 70588 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 70649 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 70710 29 96.6 32 ............T................ CAATTCATAAATTAATTTACTATTTTGAGTGC 70771 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 70832 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 70893 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 70954 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 71015 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 71076 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 71137 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //