Array 1 619-111 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPUZ01000155.1 Pseudomonas aeruginosa strain 559543 contig_155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 618 28 100.0 32 ............................ TGTATATGCCCGTGATAGTAGCGGGTCCAAAG 558 28 100.0 32 ............................ CTGATCCGGGCGACGGTGGAGACGGTGGGGAT 498 28 100.0 32 ............................ TGGCACTCTGATCAGCGCGCAGCTCGAACTGG 438 28 100.0 32 ............................ GTATCCGCCCGGCCAATTCCGCATCAACGGTA 378 28 100.0 32 ............................ AAGCATCGTAGTTCGCCATTAGAAGGCCCCCA 318 28 100.0 32 ............................ GCGACTGGGACGTTGTGCTGCTGCAACTGACC 258 28 96.4 32 ..................C......... AGAAAAAGCCCAGCCTTCGAGCTGGGCTTTTT 198 28 100.0 32 ............................ TCGAAGGGTGGAAAAATCCGCGAATGAGAGGG 138 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.6 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : | # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9454-8466 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPUZ01000071.1 Pseudomonas aeruginosa strain 559543 contig_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9453 28 100.0 32 ............................ TCGCGACCGCCCCACCAGCCGGCCGTCCAGAC 9393 28 100.0 32 ............................ TACTGGAGGTGTCGGAGTTCGAGCCGAGCCAG 9333 28 100.0 32 ............................ TGATCGGAGCCCTCATTGCACACGCTCCAGCC 9273 28 100.0 33 ............................ AACCAGGGCGGATAAAATCTGCCCTTCTGGATT 9212 28 100.0 32 ............................ GGTAGACGCTGCCAGGTTAGCGGCCCGGCAGT 9152 28 100.0 32 ............................ AGCTCGGCCAGCGCAGCCCGGCGCGCTTCGCC 9092 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 9032 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 8972 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 8912 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 8852 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 8792 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 8732 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 8672 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 8611 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 8552 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTCGGGCGA 8493 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 711-1818 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPUZ01000024.1 Pseudomonas aeruginosa strain 559543 contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 711 28 100.0 32 ............................ AAGCGGGCCGACAGCGACCAACAAACTACTCG 771 28 100.0 32 ............................ TTCGGTTGCATCAGCCGCGTGCGCCGGTTCGA 831 28 100.0 32 ............................ TGAATGGGGATGCTAACAGCCAGTATCATACC 891 28 100.0 32 ............................ CTGAATGGTACGAATACACTGTTACCCTGAAT 951 28 100.0 32 ............................ ATCGAACCGCGGCGACCGTAGGCCATCGATCG 1011 28 100.0 32 ............................ CTCGCCGGGGGGCAGGGATGCAGGGGGTAAAT 1071 28 100.0 32 ............................ GTCTGTTCGTCTCCGAGCAAAGCGCAAACGTG 1131 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 1191 28 96.4 32 ..C......................... TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 1251 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 1311 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 1371 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 1431 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 1491 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 1551 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 1611 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 1671 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 1731 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 1791 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //