Array 1 13206-11713 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLP01000049.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008085 CFSAN008085_154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13205 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 13144 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 13083 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 13022 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 12961 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 12900 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 12839 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 12778 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 12717 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 12656 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 12595 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 12534 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 12473 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 12412 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 12351 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 12290 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 12228 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 12167 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 12106 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 12045 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 11984 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 11923 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 11862 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 11801 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 11740 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29949-28167 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLP01000096.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008085 CFSAN008085_201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 29948 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 29887 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 29826 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 29765 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 29704 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 29642 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 29581 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 29520 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 29459 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 29398 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 29337 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 29276 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 29215 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 29154 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 29093 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 29032 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 28971 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 28910 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 28848 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 28745 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 28684 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 28623 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 28562 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 28501 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 28440 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 28379 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 28318 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 28257 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 28196 29 96.6 0 A............................ | A [28169] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //