Array 1 1549436-1548374 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFCB01000003.1 Aggregatilinea lenta strain MO-CFX2 SCF03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1549435 37 100.0 37 ..................................... ACACGTCCTTAGACTTCAAGAACCGCGTTGGCACTGC 1549361 37 100.0 36 ..................................... ACTACCCTATACTGCTGTCCGCTGGTTTGACCAATG 1549288 37 100.0 36 ..................................... TGCGCGGCGATCTGCCCGTCCACCCACGCCGCCGTG 1549215 37 100.0 35 ..................................... CTATGGCATGGCGATCGCCCAAGCCGTGCCGCTGC 1549143 37 100.0 37 ..................................... TGCTTCTTCATGACGGAATGCACGCGGCCTTCAACAC 1549069 37 100.0 36 ..................................... GTTAACCTGATCAGTGTTAAACCAGATCTCACAAAA 1548996 37 100.0 35 ..................................... ACAGCTCGAAGAGCGGGGCCACCACCTCGATAAAC 1548924 37 100.0 36 ..................................... ATAAGATAGGAGCGCATGATCGGTTCTGCGCCCTCA 1548851 37 100.0 39 ..................................... ATCTGGAATCCGGTCCAGAAGGCCGTGTCGGCAGGCATT 1548775 37 100.0 38 ..................................... ATGAGGATGTCCGTCATCCAGGCGATCTCGTCCGCACG 1548700 36 97.3 37 .............-....................... GCGCCAGGGACTGCCATGTCGTTTTGCAGGATGACGT 1548627 36 94.6 36 .............G..-.................... TCCTGAAGCACCTGCCACGGCTCGACCGTCTGCACG 1548555 37 91.9 35 ....T....T...C....................... AAGTTCATGTTCCAGCGTTCGAGCGCGTGCCCGAT 1548483 37 97.3 36 .............G....................... GTAAAGCCGTATGCTATCGCGTTAGCCATCGTTACA 1548410 37 83.8 0 .....G..........................TTTCG | ========== ====== ====== ====== ===================================== ======================================= ================== 15 37 97.7 36 GTTGCACCGGGCATAATCCCCTTCGGGGGATTGAAAC # Left flank : CTCGAAATCAGCGCAATGCGCTTCGGATCGCGCTCTACCGCCTCATTTTCGCATCGACCTGTTGAGCTTGCGGGCGAAAGGATTTAATAACGAAAAATGGAGCGTCTTAATCTCGGCAAAGCACAAGAATCGCCTCACATCACCGCCACCGCAGCGCTAAAACTCGCCAGATCGCCCTCGGTCGCATCAAAAACGCGGTTTGCGGGCTTCATGCAAAATCAGGCGGTTCGAGTCATATCGAACTCTATACTCATAGGGCACGTTGAAGCGTGATGTGACGCCGCGCATGCACCGGGAAGCGTCCGCGTGGAGCGAATATCGTGCGGCTTGTCGAAACTCCCCCCGTTAGTGGTGCAGAAACCGAGTTTCGACGCGGTGACTTGTGCGGAGGCCAATTTGCGGATACAGTCGGAAATATCGACGCGCCAGAACGCGCTGTAGGGCGTCAGAACGGCAGCACAGGTCATCAATGACCTGGAAAGCCCGTTCCGGCTGGTACG # Right flank : TTGTACAATGCCTCTGGACTCGGCTACTGGAGAAAGGACCGCACATGACCGATCTCGGCGCGCTGGTGCTCACACTGCGCGCAACCCGTGCGCTGGAGATCCGGCAGCACATGGGCCGTGCCGTGCAGCAGTTGTGTCTCGATCTGGTGCGCGATGTCGATCCGGCCCTGTCCGCCGAAATCCACACCACTCACCAGGTTCAGCCCTATACCGCCAGCGGGTTGCTGCTGCCGAACTCAACGCACCGGCTGGCAGGCACGGTCGCGCCAGGGGATCAGGCATGGGTGCGGCTGGTCGGGCTGCGCGCGGATGTCGTCGCGGCGCTGGACGAGGCTGTGCGGCGGTCGCCCTCTGCCCGCGAACTTGATCGAGTCCCCTGGGAAATCGAGCGAGCCACCTGGACCGATCATCCCTGGGCGGGACAGACCACTTATGAAGCGCTGATCCGGCATCACCATAGCGCTGCGCCGCCTACCGCCGTCTGGTTCGAGGTCGCGTCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGGCATAATCCCCTTCGGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [31-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 1549952-1553002 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFCB01000003.1 Aggregatilinea lenta strain MO-CFX2 SCF03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1549952 37 100.0 36 ..................................... GCAGTAGTCAGCACTGCCATTGACTTTGTTGGTGTC 1550025 37 100.0 35 ..................................... CCAGTCCTCATAAAACTGGGGAGCGACGTCGCTTT 1550097 37 100.0 36 ..................................... ACGAAAGCACCTAGTGCGTGGCTTCGGTAGTAACCT 1550170 37 100.0 38 ..................................... ATGTTCCCCCTAAGTGGATCCGGCACCGTGAACCAAGT 1550245 37 100.0 39 ..................................... TCATTACAGTCCAAAGCTTTCCCATTTTGATCCCCTTTT 1550321 37 100.0 37 ..................................... AAAACGCCATCCAACCGGGCGTCGGTTTCACCGACGT 1550395 37 100.0 35 ..................................... ACAGCAAGCCAACCCTGCCAACCGCGCGCATTCAG 1550467 37 97.3 34 ......................A.............. CCACAGGTTGAACGGGCTGCGTTGGTGTTGCTGC 1550538 37 100.0 35 ..................................... GCACCAGGAAGAGGGCATAGCCAGAAACCCTCTCG 1550610 37 100.0 39 ..................................... TGAACACATTCCAGAATCTGGATACTTTCACCTCGGTTG 1550686 37 100.0 39 ..................................... CGAAACTCAATGTGGTCTGCCTTGACTTCGGCAATGCCT 1550762 37 100.0 37 ..................................... CTTTCTTATCCATGGTTATTACCTCCAATTGGATTGG 1550836 37 100.0 37 ..................................... GTAGTGATATTTGATAGGAATGGTGAAAGTTACCACC 1550910 37 100.0 35 ..................................... GAGTTCCGGCACCGGAATCTTGAATGAGTAGCCAC 1550982 37 100.0 36 ..................................... ATGTTTTCCACTCCTCGTGAGATAAGTTTGCGATGA 1551055 37 100.0 36 ..................................... AGGTTCATCAGGAAGAACTGGGTTGTAAACACGAGA 1551128 37 100.0 36 ..................................... TAAGCAATCAGGCTTTTTGCCCAAAACAAAAGGGCT 1551201 37 100.0 38 ..................................... CCGTCCTACCGCGAACCGGTTTCTCTTACCGATTCAGC 1551276 37 100.0 37 ..................................... CTAACTTGGCCATTTTTCCCTCCTGCCATAAGGCAGA 1551350 37 100.0 37 ..................................... ACGTTAGACCCAGGCATGCAGCCTGGCCAATCGCCTG 1551424 37 100.0 38 ..................................... AAAGGAAGGCGCCTGTTTTCAGGTGACGCAGCTCTGAT 1551499 37 100.0 37 ..................................... AGCCGGACACCAGAGAAAACCGGCTGGATGCCACTGG 1551573 37 100.0 35 ..................................... CCGACTGCACGACCAAGTTCCTCGTCGGGTGGGGG 1551645 37 100.0 36 ..................................... ATGAAGTTGCATTCCCGTTTGCAATACGGGCATGCG 1551718 37 100.0 36 ..................................... GATTGATCTCTTCTATTATATGAAAGTACTCTATTA 1551791 37 100.0 36 ..................................... CCAACTATCTTATACATCTCTTTCCTCCGCTCTATG 1551864 37 100.0 36 ..................................... TTTTTGCCTCCATTGGCATGACTGTGCGAAATGCTG 1551937 37 100.0 39 ..................................... TCCTCCGGGGGCATTCCAGCCCCACCAGTCCTGCAAAAG 1552013 37 100.0 36 ..................................... CAAAATCCTTCTGCAGCAGCGTTCCAAGCAAACACA 1552086 37 100.0 39 ..................................... CGAGAGGTTCCTCTTCAGCCAGGTAGTCTTCACGCGTGA 1552162 37 100.0 38 ..................................... AGTAGTACTGCAGCCTGCTTTCGCATTTCTCTTCTCTC 1552237 37 100.0 37 ..................................... AGATCGGTGCCAGTGTCCGTGTCAGGTGCACCGTCGG 1552311 37 100.0 35 ..................................... CATGTCTGGGCCGGCTGCACTTCCTCAACCACCGG 1552383 37 100.0 38 ..................................... CCTCCGTTTTGTTGAACGATTTTTTGGTTGGGCAATCT 1552458 37 100.0 37 ..................................... GTGACTTGCATCTCAAATCCCCACGCCGAAGCGTGAG 1552532 37 100.0 35 ..................................... CCAAGCTCACCGCCAGGACGGCGACGAGCACGACG 1552604 37 100.0 34 ..................................... TTAACCTCTCTTTCTCAGAGAGTCACTCAGCTCC 1552675 37 100.0 37 ..................................... CAGTTGCCATCCCATTTCAAATTTTCATCTACGTCGC 1552749 37 100.0 35 ..................................... CAAGCCCTGTGTAATCATTACTGACTGCAAGCTCT 1552821 37 100.0 36 ..................................... CATCTTCACACGCCTCTGTCGCCGTCAATGACGGCG 1552894 37 97.3 36 ......................C.............. GCGTTCTCGCACACCCACGCCTGGTTGTCGTTGACG 1552967 36 89.2 0 ....A...........-................C.G. | ========== ====== ====== ====== ===================================== ======================================= ================== 42 37 99.6 37 GGCAGGTCAGCAGGAATCCCCTGAGGGGGATTGAAAC # Left flank : GGCTTTCCAGGTCATTGATGACCTGTGCTGCCGTTCTGACGCCCTACAGCGCGTTCTGGCGCGTCGATATTTCCGACTGTATCCGCAAATTGGCCTCCGCACAAGTCACCGCGTCGAAACTCGGTTTCTGCACCACTAACGGGGGGAGTTTCGACAAGCCGCACGATATTCGCTCCACGCGGACGCTTCCCGGTGCATGCGCGGCGTCACATCACGCTTCAACGTGCCCTATGAGTATAGAGTTCGATATGACTCGAACCGCCTGATTTTGCATGAAGCCCGCAAACCGCGTTTTTGATGCGACCGAGGGCGATCTGGCGAGTTTTAGCGCTGCGGTGGCGGTGATGTGAGGCGATTCTTGTGCTTTGCCGAGATTAAGACGCTCCATTTTTCGTTATTAAATCCTTTCGCCCGCAAGCTCAACAGGTCGATGCGAAAATGAGGCGGTAGAGCGCGATCCGAAGCGCATTGCGCTGATTTCGAGAGTAGGGCAAAATAGA # Right flank : CGCGTGGACCTCATGCCAGAGAATTTCCTGCGCAGGAATCGCGCACGTCACGTGTGCATGCTGTTGAGTGATTGAACGACGCAGGCTTACGGTTGGTGCACAAGCTCGCGCATCACGTCTGACCCCACAGGCGTTTCAGCTTCGCACAGACCGGCAGGGCGTTCTGGTGCGCCCGGTACGGCGACCGTATCGCTCGGAGCGTCGACAATCCGCAGAATGCGATCCACGCGAAACGTGCGCGCTGCCGCTGCTGTGTCGCACCACGCCTCGATGTACTCCACGCCCTCGCTGGCCGTAATGGGCAGGATCGGCTTGATCGTTCGAATCGTCTCCGCACCGTAGCCTGGACTGAAATACTCGATGGTGATCGCCCCCTGCGCTTCGTATGCGGCTTCGATTGCGCGACGGATGGCGATGGGATCATGCTGGGCGACAGGCGGCGGCAGGGCGGGGAATCCGTCGATGGTGCGCGCGAGCCGTTCGTGGATCAGCCCGGCGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCAGGTCAGCAGGAATCCCCTGAGGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.90,-9.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 1555539-1557933 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFCB01000003.1 Aggregatilinea lenta strain MO-CFX2 SCF03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1555539 37 100.0 36 ..................................... ACAAGTTCAGTGGGATCTTCGATAGAGAGCCAACCG 1555612 37 100.0 37 ..................................... CCATCCGTCCAGGCCTCCACGTATCCCATGCTCGTTG 1555686 37 100.0 35 ..................................... CTTTTCACCCGCCCGAAGAACCAAAGCCACCAAGC 1555758 37 100.0 37 ..................................... GTACTCCAGCCACTCACTGCAGTCATAATTGCCACAG 1555832 37 100.0 39 ..................................... CCATGGGTACGGGCTGGTCACAGTAGACGGTGGCGTTGA 1555908 37 100.0 36 ..................................... CTGTACTGCTTGCCAATGAGTTCACCAGCTGAGTTA 1555981 37 100.0 38 ..................................... CGGCTGCTTTCGCAGAACCGGTGTTGGCCAAGCCCAAC 1556056 37 100.0 38 ..................................... CCAACGGATATGAGGTATAGCAAAAGCCCGGAGTTGGG 1556131 37 100.0 38 ..................................... ATGGTTTCATCCCCATTAGGGTTGCACCCGTCCATATC 1556206 37 100.0 38 ..................................... ATGGTTTCATCCCCATTAGGGTTGCACCCGTCCATATC 1556281 37 100.0 34 ..................................... AAACTAAGCTATACGGGCCGAGCCAATTGCTTGA 1556352 37 100.0 36 ..................................... CTACCAATCACCACGTTGTCGCTCGCGTTGTCGGCG 1556425 37 100.0 36 ..................................... AAAGTATTTCCCCTGAGGGCATTGTGGGTCAGAAGG 1556498 37 100.0 36 ..................................... AAAAACCAGGATCGTCTGCGGACGCCCAAGCGACGA 1556571 37 100.0 38 ..................................... GAAATTCTTTCCTTTCGCGTTCGCCCTGGACAAAATAG 1556646 37 100.0 35 ..................................... TTATTCCACTCGGCGTGATATCCCCAACCATCAGG 1556718 37 100.0 36 ..................................... TGAAAGATTACTGACCTGGAGTCAGACTATCCCGAG 1556791 37 100.0 37 ..................................... CAGGACACCTGCCCCGAAGAGCAGATAAACCCGCTTT 1556865 37 100.0 36 ..................................... CCTAGCTCCTTAGCTCAATATGCACAATGTTCACGA 1556938 37 100.0 37 ..................................... AAACATCTGCTTCTTGGTCAGCATCTTTCTGCTCCTT 1557012 37 100.0 37 ..................................... GAAGCTATGTCTCCCCGCTTCTCTGGCCAATCTGCAC 1557086 37 100.0 40 ..................................... ATGAGCCAGACCATGGACGAGTCTTCGGCACAGCCCATGA 1557163 37 100.0 35 ..................................... CAATACCGCCCCCCACACGGTGAAGGCGTTATTTA 1557235 37 100.0 36 ..................................... CAGTGAAGCAAACAGCATTGCGATAACAGAAGCTTG 1557308 37 100.0 36 ..................................... TGACCCTTGCTCCAATTGCGGCAAGGGCGGTAGTGG 1557381 37 100.0 38 ..................................... TAATCACGGTTTCTCCAATCGAATCGGGCCTGTATTGC 1557456 37 100.0 38 ..................................... CAGCAATGCACATGAATGGGAGGATTCCCCCGCCCATG 1557531 37 100.0 38 ..................................... TGGTGTACTCCAACACGGACCACGCATCCGTGTTGATG 1557606 37 100.0 36 ..................................... GCATGACGTTGCCGGTTGCCCAAACGAAACGACCTT 1557679 37 100.0 36 ..................................... ATGTCATCCTCCGCCACCCAGTCATGCTGCCATACA 1557752 37 100.0 36 ..................................... CGAATGTCCTGGAACTGCTTGTTATTCATTTTCCTG 1557825 37 91.9 35 .G....C...............C.............. CGGAAGGCGACTCGACAGTGATCCGGAGACCACGA 1557897 37 83.8 0 .G...AC......A.....................GG | ========== ====== ====== ====== ===================================== ======================================== ================== 33 37 99.3 37 GACGTGTGAGGAAGAATCCCCTGAGGGGGATTGAAAC # Left flank : GCGGCCAGCGCCGCCCGGTCCTGAAGCGACAGGCTGCGGAAACTGCGCCGCAGTTGGCCCGCCACCAACTCATGGTGCAGCCGGGCGCAAGCGGCTTTTTTGTCCAGATTCGTGTTGAAACGCAGGCCGTGAGCGTGCGCGGTCGCGCGCAGCTCGCGCCAGGTGCGATGTTCGAGCGCGGTGGATAGTGAGACGCGCATCAGAAGCTCCATCGATAACGTTGCGCTCACTATAACATAGCCGTGGATGTGACTCGGAAGGCTCGTTTTTGCATGAAGCCCGCAAATCGCGCTTTCGATACGAACTGAAGTGCTCCGGCGAAGTTTCGGGTTTCGCTGGCCGTGAAATGAGGCCGTTCCCGCGCTCTGCCGGGATTAAGATGCTCCATTTTTCGTTATTAAATCCTTTCGCCCGCAAGCCCGACAGGTCGATGCGAAAATGGGGCGATCCAACGCGATCCAGTGTGCATTGCGCTGATTTCAAGAGTAGGGCAAAATAGG # Right flank : GCGTGGCCCTCGATCAGAGAAATTTCCTGCACAGGAATTGCGCCTGAGAGACACGTTCTGCCGAGATTGAAACGCGCGAGCGTATGAACCAATCATAAGCTCGCGTGCCGTTACACAACGTAGTGACCTCGCGTGCGTTCCAACGTGGCACGGGCCAGCGTGATGATCTTCGGGATGTCCCCTTCGTTGAGCGGATAGAAGCGCACATCATCTTCCTCGTCGTCGATGGCGCGCTGCAAGTCTCGCTTCAGCCTCTCCAGCCGGGCATTGTTGATCTCGCACTCGAATACGCTGTACTGCACCCGCCGTCCCGCGCCCTCCATGATCTTCACCACCTTGCGGCGGCGCTTGTCGTCGGGGATGTCGTAGCAGACTACCCAGAACATGGTGCACCCTTCGTACACCATCGCCGCCCGGCGACGGCTTCAGTTGCCAATGCGTGCGCTACGCCATTCCGGGTGCGCGGGATATGGGTATATGTCAGGTGCGGTATGCGCCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACGTGTGAGGAAGAATCCCCTGAGGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.90,-9.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 4 1562402-1563387 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFCB01000003.1 Aggregatilinea lenta strain MO-CFX2 SCF03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1562402 37 100.0 36 ..................................... ATTAGATACGAGAAAGGATAAGCACAGAATTAAACC 1562475 37 100.0 38 ..................................... CGAATACATCCCTAAGGACTACCGCGACGCCGTAGAAA 1562550 37 100.0 36 ..................................... AAAAAATTGAGGCTGAGGTTTCTTCAGTACAATCAT 1562623 37 100.0 35 ..................................... ACAGAATGCTCTTCGAGCACCCATTCTTGCTCGCC 1562695 37 100.0 39 ..................................... CATTTACGTCGGTGTCCGAGTAGCTTTCGGGCATCAGGT 1562771 37 100.0 36 ..................................... AAAACAACAGCTCATGCATGCCAACAGCCTTATCTA 1562844 37 100.0 36 ..................................... ACCCAGGGAGAGGGAAGTCCGCACGCTAGAGTATTC 1562917 37 100.0 36 ..................................... AAAAATTAGGCTGTGCAATACAACTACTTTACCATC 1562990 37 100.0 36 ..................................... TCTGGTTGCTGCACTGCTCCTGACTCGTACCATTCC 1563063 37 100.0 35 ..................................... CAACTCGCCATTTGGCCCAGACAGCGGGAAAGTGT 1563135 37 100.0 34 ..................................... CATCTTCTGGGACGAGGATGAATACCTTCACCCG 1563206 37 100.0 35 ..................................... CATTTCTCCATAGCGATATCCGCTAGGGTCAAGAC 1563278 37 100.0 36 ..................................... GTAAAACCTGGGGATACCTGTGGCAAATCAACGTGC 1563351 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 100.0 36 GGCACGTGAGGCGTAATCCCCTGAGGGGGATTGAAAC # Left flank : GCGACACCAACCAACACATGAGCGCCAGGCCCATCACAGACAGCACCAGACAGCCCGATGTCCACAGGTTCGATTTGCGCGGTGTACTGCTCATCAGTTCCTCCTAAAAATGGTCGCTTGAAAACTGTGTCTATAGCGTGCCACCAGATGTAGGCGCTCGGAAGCGAAATCATGCGGGGTTTTCCACTAACGGTTTAGGGTTTAGCCCGGATCAGGTGGAGCATGCAGAGGAATGGTGAGCCTTGATGTGACTCGAACCGCCTGTTTTTGCATGACGCCCGCAAAACGCGATTTCGACGCGATTCGGTGCAATTAGAGGCGAAAAGACGATCCGTCCGAATGTAGACAGCGGGTCGCTAACCCCATCCAGGGCCATTGGGGTGTTCATTTATCGTTATTAAATCCTTTCGCCCGCAAGGCCGACAGGTCAATGCGAAAATGGGGTGATACAGCGCGATCCGAAGCGCGTTGCGCCGATTTTGAGAGTAGGGCAAAATAGG # Right flank : CATAGATGCTCGGCTCCTCGCAAACGGAGGTACTCCTGAGCTAAGCTGTTGATAAATCGAACCGCCCCGTAAAAGGCCGAAAACCTTGACGAAAAAACGCCTGTGACCACAATGGTCCGGGCGTTTTGAATGATGCATCAAGGGGTAGGTGAAGAGTGCGAATCGAGCGGTAGATCACTCTCGTCTTGGGGATCGTACTGGTGCGAGCGTGGTGGAAGCCGTACCGGCGGCGGATGCGACGGTGGTGGCAGCGCACCAAAGATCAACTGCCGCGGCAGTGGCATCCGAAAAGCCCTGAGTACTGCCCGCTGTGCCATGCCGAGGTGGTAGGAATAACGGAGCCAGCTTTTGACATCCAAGCTGTAGAATCGTACCGGGAGAGTAAAAGCCGACGAGGAAGAAAGAAAATGATTCAGACCGAAGGCTATGCATGTCCGTACCCAGACTGCAAGTACTTCAGGGTGACCGAGGCCCAACGCCATGCGTTGGTGGGCTTCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCACGTGAGGCGTAATCCCCTGAGGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.70,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 5 1571740-1572146 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFCB01000003.1 Aggregatilinea lenta strain MO-CFX2 SCF03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1571740 37 100.0 36 ..................................... ACCTGAGAGGGAGGGGCATTGTAGATGGGCCGTCGC 1571813 37 100.0 37 ..................................... GTGTGCCGCTTGCGGCGGACATACCGGCGGCGCTGTT 1571887 37 100.0 36 ..................................... GGGCGACCTGGCTGCGATCGCGCTGACCGGGACGGG 1571960 37 100.0 39 ..................................... ACGCGGGGGACGGCTGGTATTGGCGCGACGAAGCGCGCA 1572036 37 100.0 38 ..................................... AGCACAGCCTACGGCTACACCCGTGGCTGCGACGCAAG 1572111 36 89.2 0 .......................C......-....GT | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 98.2 37 GTTGCAGGAAGCCATGCCCTTTATAGGGCGTTGAAAC # Left flank : GCCAGGAACTGGAATCGGAAAAGAACCGTCAAAATAAGAAGGTAACCGTTGTGCTTCAGTGCGGTGCAGACCGACTGGAGTTGCCAATTGAACTGCGCCGCGTAGAGTTGACTCGTGCGGAGGTTCTTGGGCGTATCGGCATGCTTCCGATGAAAGTGAAAGGCCAGCGGTTTTCGCTGGACTATGTAAGCACCATCGAATTTGCCCGACAAATCAGTCAGATTATAGAAGGTGAAGGAGATGCGCTGCTGACAATTCCCTGTGAAAAGCAGGAACTCGACCAATTCGATGTCACCCGACGGCGGGCGTAGTAAATAGTGCTATTGCCCGTCGCAACTCGCCCGCGTTTTGGCGCAGTAATCGAGTTTCGATCCGCTTTAGGAAAAAGAAGGCGATTTGCGATCATCCTCGAAAAGTTTACACTCACCAGTAAGGTCATAGAGGTGTGTTTTTGCTTCATTAGGTCATTTATGACCTGAATCTGTTTTCTGGCGACCGCA # Right flank : TGATACCCGGCGCTTACGCGCTGCGAAGTTCGTGTGTACAATTCTCCGTATGCTGCTCTCAGCTGTTCTTCTTCTCGATCCGCTAGATGAGCCCGCCTACGGGACACGCACTCGCCAGTTTCAGCGTTGGTTCAAGGACACGGTGGAAGCCTGCGATCCGGCGCTCTTCGCACATCTGCACCAGGACAATGCGCCATGTCCCTATACCCTCTCCGGTGTGACGCTGCCCGAGGGTGAATTTCCCGCCTGGCTACGAATCACCAGCCTGGATGTCGACCTGAGCGCACTGCTGCGCGATCGTGTTTTTCCACAAGCCAGGCAGAAGGGTGAAATCGTGCTGAGCGCGCGGGGGCACGGCGCGTTTCGGGTTGCGTGGTATCGACGTTGGGCCGGAACGGACGCTGCCGTTTGCCGGGTTGAACGTGAGCCCGGAAGAGCCGTGCGTGTGGGCAGGCCATACACGGTTCCAGGTTCACGCCGATGCCGCCATTGCCGTGCCC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGGAAGCCATGCCCTTTATAGGGCGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.30,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //