Array 1 2019911-2021634 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024742.1 Akkermansia muciniphila strain EB-AMDK-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2019911 31 100.0 34 ............................... ATCGTATGCGGGCAGGCCCATTTCGCCGCAAAAG 2019976 31 100.0 34 ............................... TAAAAAATAATGATAAATTGAATGCATCAAAGGG 2020041 31 100.0 34 ............................... CCGGCGCGGGGGCCAACATGTCTTGTCCGCTTGT 2020106 31 100.0 34 ............................... CGGACGGCTCTCTATTCTGAAAATCAATCTCCTA 2020171 31 100.0 33 ............................... TTTATCAACTCTAATAAGTTTTTTGTTCATGCG 2020235 31 100.0 33 ............................... AGTTTCCATGATTGTTTCAACTTCTCCGGTGCG 2020299 31 100.0 34 ............................... CACATGGAACATTTACAATTTAAATCCAAAAGAT 2020364 31 100.0 34 ............................... TTTATTGCCTGCGCACAGAAGTGTCCATGTCCAG 2020429 31 100.0 35 ............................... TGTTTGGTTGATTGTTTTGTTCACCGCCCCTTATT 2020495 31 100.0 34 ............................... AAGGTTGTATGACAAATTACAAATAATTAACATG 2020560 31 100.0 36 ............................... CTGTTCCGCAATCAGGGCAATGTCTTTTTGCTGACG 2020627 31 100.0 35 ............................... CGAAAGATATAGCGGCGGCCTTTATGCTGACTCCC 2020693 31 100.0 33 ............................... CCTACCAGATGGCCCGCATAGGCATTTCCGCGG 2020757 31 100.0 34 ............................... CCTTTGGAGTGCGTTCTTAACCCGTTTTTTAGCG 2020822 31 100.0 34 ............................... TGCTTGCCCATGCCCGCTTCCTGGAATCGAAATT 2020887 31 100.0 34 ............................... CGGCGATAAGGTTAATGGTTGCGACTACATGGGG 2020952 31 100.0 34 ............................... AGTTTGTCTTTATTCATAGTCTATTGTCTTTCTA 2021017 31 100.0 35 ............................... GTTTACCCCGGGTCCGGTCGGGCAGGGGTGGCAAA 2021083 31 100.0 34 ............................... TGAATGCTACGTCCTGCCAATTCTGGGAGATGAC 2021148 31 100.0 34 ............................... ATGCCCCCCTCCTTTCCACGATTTGAATCCTGCG 2021213 31 100.0 34 ............................... AATAGATAAAAACACTTATAACCGTATCGTGTTG 2021278 31 100.0 33 ............................... AAACGGTGATGGTTCTCTCAAGGCTAGCAACAA 2021342 31 100.0 35 ............................... ACACCGTCTTGTGCAAGTCCATGACGGCGGTATGG 2021408 31 100.0 34 ............................... AAGCTCGCTTTTAATGCGGTTCCCCTGCTTTTTC 2021473 31 100.0 35 ............................... GAGGCAGAAAAGCCAATGCGCACCCATGTTGACGG 2021539 31 100.0 34 ............................... AAAAATGATATAAAAAATATACTAAGGCCCTAAA 2021604 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 27 31 100.0 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGTTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCGTTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTCCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAGCGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : CATTCCCGCCTACTTCTACGTCATCCGCTACGAGCGTCGCTGAGGAATGACAGGAGAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAAACACGGGAGTTAAGCAGGAACAGGCCAGGCACGAGCTATCTTATAAAAGTCGGAGCTAAAAAGAGGGCAGATGACAGGTATCTGATATAAGTACACAAGCTATGCAGGGATGTTGCACAAGATCTGCAAAGGGTAGGTGATAGAGAAACGACAAGGTAAAAAATCATGATAGGATGTCCCGCATGTGTACACCTGCATATTGCATTCCCTTGTATGGCTCCATGACTGTTATCTCGCCCGAAGACCGAAGGAAAAAGAATCCGCAAATTTATCATCTCCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAAAGAAGTAAGACGACATGCTGGGTGCGGGATGGTCGCACCCTCACGGGTGCGTGAATTGAAGTTTTATGTATGTTTGACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2513619-2509574 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024742.1 Akkermansia muciniphila strain EB-AMDK-2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2513618 33 100.0 33 ................................. TTGCGATATGAGGCTACCCGGCCAGTTGCCTAT 2513552 33 100.0 34 ................................. TTGGCATGGTCGTCGTAAATGCTCATAATCTTAT 2513485 33 100.0 34 ................................. AAGTAACGGAAATCACTTCCGAAGGCCGTTCCAT 2513418 33 100.0 34 ................................. CGCTGATACCATTTCCAATTCCCGGCCGGTTGCG 2513351 33 100.0 34 ................................. TGTTTCTACAAGTTAGATACATTTTAATTATATA 2513284 33 100.0 34 ................................. CTTTTTAGGGACTAGGTATAAAAAGTTTCCCCCT 2513217 33 100.0 33 ................................. ACGGGCCTTGCTAACCACTTCCGGCAATTGCAC 2513151 33 100.0 34 ................................. ATAATAGTCCGGGGAATGTACGTCTACCGCACCC 2513084 33 100.0 34 ................................. GGCAAACAGGACAAGGGACAGGACGCCGGAACCG 2513017 33 100.0 34 ................................. TGTCACCTACGGCGCAGGACTGCCCGCCGCACAA 2512950 33 100.0 34 ................................. AATATAGGCATATCGGCCTGCCCCCTCATAATAG 2512883 33 100.0 34 ................................. CATGATTGTTTCTACCTCGCCGGACGGAAAAATG 2512816 33 100.0 33 ................................. CCCGTGCCTGAAATAAATGTCTTCCGACATCGG 2512750 33 100.0 34 ................................. TCCGGATGCTGGAAAGGCTGTTGGAGTTGGCCCC 2512683 33 100.0 35 ................................. CGGATGCCACCGGGTGCCGATGACGAACACCCGCC 2512615 33 100.0 35 ................................. CCTTGATTTTCTACTGGATTCTTTAAGCGATGACA 2512547 33 100.0 34 ................................. TCGCGGAGACCGTATCAGATTCCCGGCCGGTTGC 2512480 33 100.0 33 ................................. AGGGGGGCAGGGGGTTATACCCGGCTTACCAGC 2512414 33 100.0 33 ................................. TGCGATACGAGGCTACCCGGCCAGTTGCCTATA 2512348 33 100.0 34 ................................. ACCGGTGGAAAGGATTGCCCACACCGCCGTTACA 2512281 33 100.0 34 ................................. ATTGTTTTGGTTCCTTTCTTTTAGTGTTTCTTTT 2512214 33 100.0 34 ................................. TTTTAGTTTAGTTTAGTGTTTATTGTTTCGGGGG 2512147 33 100.0 33 ................................. CCACATGGACGACCTTGCCGCCGCCGTAGACGG 2512081 33 100.0 34 ................................. CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC 2512014 33 100.0 34 ................................. CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC 2511947 33 100.0 34 ................................. TTGTATAAAGTCCACCATCTTGACGGCACCTGCA 2511880 33 100.0 33 ................................. ACAGGAACGCCCCCCCTCCGGGAAGAAACCGGC 2511814 33 100.0 34 ................................. CGCAAAAATGACGAGGGACAGAATGCCGGAGCCG 2511747 33 100.0 33 ................................. GATTGTTCATGATTTAGTTTCCTTTCTTCTTTT 2511681 33 100.0 33 ................................. CTTTCGGTTGTGTTCCCCGCCCCATAGTAGGGC 2511615 33 100.0 34 ................................. AACCCCGTCTAAGTAGTCCACATCGCCTAAGCGG 2511548 33 100.0 34 ................................. TATTGTTTATTGTTCCGGGGGTTGCCCCCGTTGA 2511481 33 100.0 34 ................................. ATTTCCGCCGTCTACAGCGGTAGATAAATCCATC 2511414 33 100.0 33 ................................. ATCGTACTTGGGCAGTCCCATATCTTCACAAAA 2511348 33 100.0 34 ................................. AAAACGATTGTAGTTGATCTGCTCGAAGACGTTT 2511281 33 100.0 34 ................................. AAGGCCAAAAGCCCATTTAGCGGTGTAGCCCATG 2511214 33 100.0 34 ................................. TGCCCTGGGACCTTAAGCCCGCCCTCGCAGACCT 2511147 33 100.0 33 ................................. TTAAAATATAGTGTTAAATTACATTCATCAAAG 2511081 33 100.0 33 ................................. CACATGGAACATTTACAATTCCAAAAGAAGCCA 2511015 33 100.0 34 ................................. TCGCCGAAACTGTTTCCGATTCCCGCCCTGTTGC 2510948 33 100.0 34 ................................. CCGGTTCCCCGGACGATATTTTCCGGGGGAAAAG 2510881 33 100.0 34 ................................. CCTCAAAAACGTCTCCATGTCTAAGGGGCCATAG 2510814 33 100.0 34 ................................. TGTGGGGTCGGGGTCATCGGTGCCAAGGTCTCCA 2510747 33 100.0 34 ................................. CACGTGGAACATTTACAAGTTGAATCCAAAAGAT 2510680 33 100.0 34 ................................. CCCCGTATATTCATCATACATGGGCAATCCCATT 2510613 33 97.0 34 ...................A............. CTTGAGCGGGAAGCCACCCGGCCAGTTGCCTATT 2510546 33 100.0 34 ................................. CGTCAAAAATGTGTCGATATCGGCGGGGTCATAG 2510479 33 100.0 34 ................................. TGGACCGCAAAGACGGTGCAATTAAGTACACCCC 2510412 33 100.0 34 ................................. TATCAAGCTCTTGCGAGCCACAAGACCCCTACCG 2510345 33 100.0 34 ................................. TGCGTACTCATGGCATGCGCCCGTGTACATGCTA 2510278 33 100.0 34 ................................. ATGAAGGAACGTTTCCATGTCCGCAAGGTCATAG 2510211 33 100.0 34 ................................. CGGGTGCAAGTACTTAAAGTGGTTGGCAAGGCCC 2510144 33 100.0 34 ................................. CGTCAAAAACGTGTTGATATCTGCGAGATCATAG 2510077 33 100.0 34 ................................. TGCGAACAGGACAAGGGATAAGATTCCGGAGCCG 2510010 33 100.0 34 ................................. TTAGATGATAAAGAGAGCGGTGTACTCTTTTGTG 2509943 33 100.0 34 ................................. TATTGTATTGTTTAGTGTTCCGGGGGGGTCATCC 2509876 33 100.0 35 ................................. TCCAGCCCCCTCCAATCTCAATCCCTATCGGAATA 2509808 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 2509742 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 2509675 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [2509652] 2509606 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 61 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //